Bayesian analysis of static light scattering data for globular proteins.

PLoS One

Departments of Sociology, Statistics, Computer Science and EECS and Institute for Mathematical Behavioral Sciences, University of California at Irvine, Irvine, CA, United States of America.

Published: November 2021


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Static light scattering is a popular physical chemistry technique that enables calculation of physical attributes such as the radius of gyration and the second virial coefficient for a macromolecule (e.g., a polymer or a protein) in solution. The second virial coefficient is a physical quantity that characterizes the magnitude and sign of pairwise interactions between particles, and hence is related to aggregation propensity, a property of considerable scientific and practical interest. Estimating the second virial coefficient from experimental data is challenging due both to the degree of precision required and the complexity of the error structure involved. In contrast to conventional approaches based on heuristic ordinary least squares estimates, Bayesian inference for the second virial coefficient allows explicit modeling of error processes, incorporation of prior information, and the ability to directly test competing physical models. Here, we introduce a fully Bayesian model for static light scattering experiments on small-particle systems, with joint inference for concentration, index of refraction, oligomer size, and the second virial coefficient. We apply our proposed model to study the aggregation behavior of hen egg-white lysozyme and human γS-crystallin using in-house experimental data. Based on these observations, we also perform a simulation study on the primary drivers of uncertainty in this family of experiments, showing in particular the potential for improved monitoring and control of concentration to aid inference.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8516215PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0258429PLOS

Publication Analysis

Top Keywords

second virial
20
virial coefficient
20
static light
12
light scattering
12
experimental data
8
second
5
virial
5
coefficient
5
bayesian analysis
4
analysis static
4

Similar Publications

When is Not Enough: Evaluating Simple Metrics for Predicting Phase Separation of Intrinsically Disordered Proteins.

J Phys Chem B

September 2025

Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, United States.

Understanding and predicting the phase behavior of intrinsically disordered proteins (IDPs) is of significant interest due to their role in many biological processes. However, effectively characterizing phase behavior and its complex dependence on protein primary sequence remains challenging. In this study, we evaluate the efficacy of several simple computational metrics to quantify the propensity of single-component IDP solutions to phase separate; specific metrics considered include the single-chain radius of gyration, the second virial coefficient, and a newly proposed quantity termed the expenditure density.

View Article and Find Full Text PDF

Controlling Multicomponent Condensate Morphology via Additive-Modulated Interactions.

JACS Au

August 2025

Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas 77843, United States.

The morphology of biomolecular condensates plays a critical role in regulating intracellular organization and function by enabling both spatial and temporal control over biochemical processes. Recent studies have shown that small-molecule cosolutes can not only modulate phase separation but also influence condensate morphology. However, the mechanistic understanding of how small molecules regulate condensate structure remains limited.

View Article and Find Full Text PDF

We report calculations of the second virial coefficient () of molecular hydrogen isotopologues in the rigid-rotor approximation using the path-integral Monte Carlo method. We present a novel method for efficient sampling of rotational degrees of freedom based on Doob's -transform that can be used with any spin isomer, including those for which the quantum mechanical propagator in imaginary time is negative, e.g.

View Article and Find Full Text PDF

Associative Phase Behavior and Negative Second-Order Virial Coefficients in Analytical Calculations of the Spinodal for Complex Mixtures Composed of Many Components.

ACS Omega

August 2025

Laboratory of Physics and Physical Chemistry of Foods, Department of Agrotechnology and Food Sciences, Wageningen University and Research, Bornse Weilanden 9, NL-6708 WG Wageningen, The Netherlands.

The calculation of spinodals for mixtures composed of many macromolecular components ( ≥ 2, not counting the solvent explicitly as a component) for a model including interactions up to quadratic terms in concentration is extended to the case of negative (second-order) virial coefficients, typically indicating attractive interactions between the components. Surprisingly, it is found that different permutations of the signs of the virial coefficients do not always lead to different spinodals. This observation is explained by means of an analysis of the effects of the signs of the virial coefficients in calculations in a parameter space introduced previously as "linear programming space", in which calculations for the spinodal can be done efficiently.

View Article and Find Full Text PDF

The aim of the research was to analyse the effect of different extraction temperatures on the colligative, hydrodynamic, and rheological properties of a water-soluble AXs fractions. The research material consisted of raw water extracts of arabinoxylans obtained from the husk at the following temperatures: 40 °C (AX40), 60 °C (AX60), 80 °C (AX80), and 100 °C (AX100). These were characterised in terms of their hydrodynamic, osmotic, and rheological properties, as well as the average molecular mass of the polysaccharide fractions.

View Article and Find Full Text PDF