Inference and Analysis of SPIEC-EASI Microbiome Networks.

Methods Mol Biol

School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD, Australia.

Published: March 2021


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Article Abstract

Network analysis facilitates examination of the interactions between different populations in a community. It can provide a range of metrics describing the social characteristics of each population and emergent structural properties of the community, which may be used to address novel ecological questions. Using a publicly available dataset, this chapter provides point-by-point code and instructions to infer and analyze a SPIEC-EASI (SParse InversE Covariance Estimation for Ecological Association Inference) network using free, open source software (R and Gephi).

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http://dx.doi.org/10.1007/978-1-0716-1040-4_14DOI Listing

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