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Restoring forest ecosystems has become a global priority. Yet, soil dynamics are still poorly assessed among restoration studies and there is a lack of knowledge on how soil is affected by forest restoration process. Here, we compile information on soil dynamics in forest restoration based on soil physical, chemical, and biological attributes in temperate and tropical forest regions. It encompasses 50 scientific papers across 17 different countries and contains 1,469 points of quantitative information of soil attributes between reference (e.g., old-growth forest) and restored ecosystems (e.g., forests in their initial or secondary stage of succession) within the same study. To be selected, studies had to be conducted in forest ecosystems, to include multiple sampling sites (replicates) in both restored and reference ecosystems, and to encompass quantitative data of soil attributes for both reference and restored ecosystems. We recorded in each study the following information: (1) study year, (2) country, (3) forest region (tropical or temperate), (4) latitude, (5) longitude, (6) soil class, (7) past disturbance, (8) restoration strategy (active or passive), (9) restoration age, (10) soil attribute type (physical, chemical, or biological); (11) soil attribute, (12) soil attribute unit, (13) soil sampling (procedures), (14) date of sampling, (15) soil depth sampled, (16) soil analysis, (17) quantitative values of soil attributes for both restored and reference ecosystems, (18) type of variation (standard error of deviation) for both restored and reference ecosystems, and (19) quantitative values of the variation for both restored and reference ecosystems. These were the most common data available in the selected studies. This extensive database on the extent soil physical, chemical, and biological attributes differ between reference and restored ecosystems can fill part of the existing gap on both soil science and forest restoration in terms of (1) which are the critical soil attributes to be monitored during forest restoration? and (2) how do environmental factors affect soil attributes in forest restoration? The data will be made available to the scientific community for further analyses on both soil science and forest restoration. Soil information gaps during the forest restoration process and their general patterns can be addressed using this data set. There are no copyright or proprietary restrictions.
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http://dx.doi.org/10.1002/ecy.3207 | DOI Listing |
Appl Environ Microbiol
September 2025
College of Life Sciences, Northwest Normal University, Lanzhou, China.
Nitrogen leaching is a major pathway of nitrogen fertilizer loss. Although arbuscular mycorrhizal (AM) fungi are known to reduce nitrogen leaching by improving plant nitrogen uptake, the soil-based mechanisms remain unclear. A pot experiment was conducted using a randomized complete block design, with four nitrogen levels (0, 3.
View Article and Find Full Text PDFBrief Bioinform
August 2025
College of Pharmacy, Chongqing Medical University, No. 1 Yixueyuan Road, Yuzhong District, Chongqing 400016, P. R. China.
Drug-induced hepatotoxicity (DIH), characterized by diverse phenotypes and complex mechanisms, remains a critical challenge in drug discovery. To systematically decode this diversity and complexity, we propose a multi-dimensional computational framework integrating molecular structure analysis with disease pathogenesis exploration, focusing on drug-induced intrahepatic cholestasis (DIIC) as a representative DIH subtype. First, a graph-based modularity maximization algorithm identified DIIC risk genes, forming a DIIC module and eight disease pathogenesis clusters.
View Article and Find Full Text PDFFront Microbiol
August 2025
Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom.
Tropical rainforests support critical biogeochemical cycles regulated by complex plant-soil microbial interactions but are threatened by global change. Much of the uniquely biodiverse and carbon rich forest on Borneo has been lost through extensive conversion to monoculture plantation, and a significant proportion of the remaining forest has been heavily modified by selective logging. Ecological restoration of tropical forest aims to return forests to a near pristine state, but restoration initiatives are hindered by limited understanding of the underpinning plant-soil feedbacks, and impacts on soil microbial communities are unresolved.
View Article and Find Full Text PDFOpen Life Sci
August 2025
College of Grassland Science, Inner Mongolia Agricultural University, No. 29 Ordos East Street, Saihan District, Hohhot, 010018, China.
This study investigates the diversity and distribution of fungi in var. (PSM) forests across Inner Mongolia, with a focus on understanding the environmental factors influencing fungal communities. High-throughput sequencing was utilized to analyze soil fungal communities across 12 PSM forest sites, alongside assessments of meteorological variables and soil enzyme activities.
View Article and Find Full Text PDFJ Environ Manage
September 2025
College of Water Resources and Architectural Engineering at Northwest Agriculture and Forestry University/Key Laboratory of Agricultural Soil and Water Engineering in Arid and Semiarid Areas at Ministry of Education, Yangling, Shaanxi, 712100, PR China; Academy of Plateau Science and Sustainability,
Alpine ecosystems are critical for water regulation but highly sensitive to climate change. In the Three-River Source Region (TRSR) of the Qinghai-Tibet Plateau, changes in temperature, precipitation, and large-scale ecological restoration have significantly altered vegetation phenology-including the start (SOS), end (EOS), and length (LOS) of the growing season, as well as vegetation growth status (GS). These shifts affect hydrological processes such as evapotranspiration, soil moisture, snowmelt, and runoff.
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