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Real-time time-dependent density functional theory, in conjunction with the Ehrenfest molecular dynamics scheme, is becoming a popular methodology to investigate ultrafast phenomena on the nanoscale. Thanks to recent developments, it is also possible to explicitly include in the simulations a time-dependent laser pulse, thereby accessing the transient excitation regime. However, the complexity entailed in these calculations calls for in-depth analysis of the accessible and yet approximate (either "dressed" or "bare") quantities in order to evaluate their ability to provide us with a realistic picture of the simulated processes. In this work, we analyze the ultrafast dynamics of three small molecules (ethylene, benzene, and thiophene) excited by a resonant laser pulse in the framework of the adiabatic local-density approximation. The electronic response to the laser perturbation in terms of induced dipole moment and excited-state population is compared to the results given by an exactly solvable two-level model. In this way, we can interpret the charge-carrier dynamics in terms of simple estimators, such as the number of excited electrons. From the computed transient absorption spectra, we unravel the appearance of nonlinear effects such as excited-state absorption and vibronic coupling. In this way, we observe that the laser excitation affects the vibrational spectrum by enhancing the anharmonicities therein, while the coherent vibrational motion contributes to stabilizing the electronic excitation already within a few tens of femtoseconds.
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http://dx.doi.org/10.1063/5.0008194 | DOI Listing |
Drug Dev Res
September 2025
Endoscopy Center, Minhang Hospital, Fudan University, Shanghai, China.
Colorectal cancer (CRC) is a common malignancy often characterized by metastasis and poor prognosis. This study attempts to ascertain the anticancer impacts of theaflavin (TF) on CRC cells and examine the fundamental molecular mechanisms, focusing on the function of DDIT4 in CRC progression. This study utilized RNA sequencing for gene expression profiling, differential expression analysis, and Venn diagram analysis for overlapping genes.
View Article and Find Full Text PDFJ Mater Chem B
September 2025
Guangdong Key Laboratory of Nanomedicine, CAS-HK Joint Lab of Biomaterials, CAS Key Laboratory of Biomedical Imaging Science and System, Shenzhen Key Laboratory of Metabolic Halth, Shenzhen Metabolism and Reproductive Targeted Delivery Proof-of-Concept Center, Shenzhen Engineering Laboratory of Nano
Bacterial infections pose significant challenges in clinical diagnostics and microbiological research due to the need for rapid, sensitive, and specific detection methods. Herein, we report the development of Cy5-NO2, a novel nitro-containing fluorescent probe designed for real-time monitoring of bacterial nitroreductase (NTR) activity. Cy5-NO2 is synthesized through a streamlined, high-yield process without chromatography, yielding a stable compound confirmed by X-ray crystallography and spectroscopic methods.
View Article and Find Full Text PDFIEEE Trans Neural Syst Rehabil Eng
September 2025
Myoelectric pattern recognition systems serve as a promising predictive control approach for the lower limbs prostheses and exoskeletons. However, their actual deployment is challenged by the signal stochastic nature that could contaminate the decision stream with physiologically implausible transitions, posing safety and metabolic cost concerns on the potential user. Therefore, this study proposes a novel Physics-Informed Bayesian Fusion (PI-BF) post-processor that embeds biomechanical sequentiality constraints into the posterior probabilistic output of the classifiers to suppress unstable transitions and promote natural gait progression.
View Article and Find Full Text PDFPolymers (Basel)
August 2025
Department of Mechanical Engineering, Faculty of Engineering, Chulalongkorn University, Bangkok 10330, Thailand.
Direct ink writing (DIW) has emerged as a powerful technique for functional-structure fabrication. However, its application to materials with heterogeneous or time-dependent rheology remains limited. This study introduces dual-mode electropneumatic extrusion, supported by a real-time digital twin.
View Article and Find Full Text PDFAntibiotics (Basel)
August 2025
Biomedical Engineering, Texas A&M University, 400 Bizzell St, College Station, TX 77843, USA.
Background/objectives: The progression of antibiotic resistance is increasingly recognized as a dynamic and time-dependent phenomenon, challenging conventional diagnostics that define resistance as a binary trait.
Methods: Biomolecules have fingerprints in Fourier-transform infrared spectroscopy (FTIR). The targeting of specific molecular groups, combined with principal component analysis (PCA) and machine learning algorithms (ML), enables the identification of bacteria resistant to antibiotics.