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Most adaption processes have a polygenic genetic basis, but even with the recent explosive growth of genomic data we are still lacking a unified framework describing the dynamics of selected alleles. Building on recent theoretical and empirical work we introduce the concept of adaptive architecture, which extends the genetic architecture of an adaptive trait by factors influencing its adaptive potential and population genetic principles. Because adaptation can be typically achieved by many different combinations of adaptive alleles (redundancy), we describe how two characteristics - heterogeneity among loci and non-parallelism between replicated populations - are hallmarks for the characterization of polygenic adaptation in evolving populations. We discuss how this unified framework can be applied to natural and experimental populations.
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http://dx.doi.org/10.1038/s41576-020-0250-z | DOI Listing |
New Phytol
September 2025
Department of Ecology & Evolution, University of Chicago, Chicago, IL, 60637, USA.
Understanding the rate and nature of adaptation is crucial for managing biodiversity across our changing landscapes. This perspective synthesizes insights from resistance evolution - a case of rapid, repeated adaptation to extreme human-mediated selection - to reveal how adaptive genetic architectures determine and feedback with evolutionary dynamics. Recent population genomic and quantitative genetic approaches have demonstrated that the extent of genetic parallelism and reliance on de novo vs standing genetic variation can vary with the complexity of genetic architectures.
View Article and Find Full Text PDFFront Genet
August 2025
College of Poultry Production and Management, TANUVAS, Hosur, India.
Background: India's indigenous sheep breeds have evolved under extreme and diverse agro-ecological pressures, yet the genomic basis of their resilience and local adaptation remains poorly understood.
Method: This study combines genomic inbreeding estimates, runs of homozygosity (ROH), population structure analyses, and composite selection scans to investigate three native Indian breeds-Changthangi, Deccani, and Garole-within a panel of nine breeds that also includes populations from Africa (Ethiopian Menz), East and South Asia (Tibetan, Chinese Merino, Bangladesh Garole, Bangladesh East), and Europe (Suffolk).
Results: ROH and heterozygosity estimates revealed strong contrasts: Bangladesh East sheep exhibited high genomic inbreeding (F≈14.
Trends Ecol Evol
September 2025
GEOMAR Helmholtz Centre for Ocean Research Kiel, Marine Evolutionary Ecology, Kiel, Germany.
Chromosomal inversions are ubiquitous across the Tree of Life, with genome-wide studies revealing a bias toward smaller inversions, yet research has disproportionately focused on large, supergene-like inversions linked to discrete phenotypes. This limits our understanding of inversions' roles in trait evolution, as their size affects their potential functional impact. Investigation of smaller inversions and multi-inversion genotypes is crucial to elucidate their role in shaping continuous traits and evolutionary adaptation.
View Article and Find Full Text PDFPhilos Trans R Soc Lond B Biol Sci
September 2025
Northeastern University, Boston, MA, USA.
BMC Plant Biol
September 2025
Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Stuttgart, Germany.
Background: Understanding how crops adapt to specific environmental conditions is becoming increasingly important in the face of accelerating climate change, but the genetics of local adaptation remains little understood for many crops. Landscape genomics can reveal patterns of genetic variation that indicate adaptive diversification during crop evolution and dispersal. Here, we examine genetic differentiation and association signatures with environmental gradients in soybean () germplasm groups from China that were inferred from the USDA Soybean Germplasm Collection ( = 17, 019 accessions) based on population structure and passport information.
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