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How ubiquitous transcription factors (TFs) coordinate temporal inputs from broadly expressed epigenetic factors to control cell fate remains poorly understood. Here, we uncover a molecular relationship between p53, an abundant embryonic TF, and WDR5, an essential member of the MLL chromatin modifying complex, that regulates mouse embryonic stem cell fate. Wild-type Wdr5 or transient Wdr5 knockout promotes a distinct pattern of global chromatin accessibility and spurs neuroectodermal differentiation through an RbBP5-dependent process in which WDR5 binds to, and activates transcription of, neural genes. Wdr5 rescue after its prolonged inhibition targets WDR5 to mesoderm lineage-specifying genes, stimulating differentiation toward mesoderm fates in a p53-dependent fashion. Finally, we identify a direct interaction between WDR5 and p53 that enables their co-recruitment to, and regulation of, genes known to control cell proliferation and fate. Our results unmask p53-dependent mechanisms that temporally integrate epigenetic WDR5 inputs to drive neuroectoderm and mesoderm differentiation from pluripotent cells.
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http://dx.doi.org/10.1016/j.celrep.2019.12.039 | DOI Listing |
RSC Chem Biol
July 2025
Institute for Pharmaceutical Chemistry, Johann Wolfgang Goethe-University Max-von-Laue-Str. 9 D-60438 Frankfurt am Main Germany
Herein we present the rapid development of LH168, a potent and highly selective chemical probe for WDR5, streamlined by utilizing a DEL-ML (DNA encoded library-machine learning) hit as the chemical starting point. LH168 was comprehensively characterized in bioassays and demonstrated potent target engagement at the WIN-site pocket of WDR5, with an EC of approximately 10 nM, a long residence time, and exceptional proteome-wide selectivity for WDR5. In addition, we present the X-ray co-crystal structure and provide insights into the structure-activity relationships (SAR).
View Article and Find Full Text PDFBackground: Histone H3 lysine 4 methylation (H3K4me) is generally associated with active transcription and bivalent chromatin, but can also contribute to repression. In metazoans, H3K4 methylation is catalysed by KMT2 methyltransferases assembled with the core scaffolding proteins WDR5, ASH2L, and RBBP5. RBBP5 mediates complex assembly and nucleosome binding, whilst WDR5 stabilises interactions to promote tri-methylation.
View Article and Find Full Text PDFBiochem Biophys Res Commun
September 2025
School of Life Sciences, Anhui University, Hefei, Anhui, 230601, China. Electronic address:
WD repeat-containing protein 5 (WDR5) is a highly conserved chromatin-associated scaffold protein that recognizes short, arginine-containing WDR5 interacting (WIN) motifs in various partners to assemble transcriptional complexes. Although the WIN motif has been considered strictly arginine-dependent, our previous binding assays showed that the MBD3C_R43K variant retained binding to WDR5 (K = 1.31 μM), though the underlying mechanism remained unclear.
View Article and Find Full Text PDFRegen Ther
December 2025
Department of Orthopedics, The Second Affiliated Hospital of Hunan University of Chinese Medicine, Changsha 410005, Hunan, China.
[This corrects the article DOI: 10.1016/j.reth.
View Article and Find Full Text PDFJ Mol Biol
July 2025
Mag-Lab, Karl-Farkas-Gasse 22, 1030 Vienna, Austria; Institute of Organic Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 38, 1090 Vienna, Austria. Electronic address:
Histidine is a versatile residue with distinct properties ensuring many proteins' structure and proper function. Its imidazole side-chain represents an ideal chemical entity to serve as a proton shuttle in enzyme mechanisms, control recognition interfaces either by contribution of its aromatic Pi system or in its cationic form, and acts as a coordinating ligand to metal cations. These functional capabilities are modulated by the local molecular environment, which influences pK values and tautomeric states.
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