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Given the catastrophic changes befalling coral reefs, understanding coral gene function is essential to advance reef conservation. This has proved challenging due to the paucity of genomic data and genetic tools available for corals. Recently, CRISPR/Cas9 gene editing was applied to these species; however, a major bottleneck is the identification and prioritization of candidate genes for manipulation. This issue is exacerbated by the many unknown ('dark') coral genes that may play key roles in the stress response. We review the use of gene coexpression networks that incorporate both known and unknown genes to identify targets for reverse genetic analysis. This approach also provides a framework for the annotation of dark genes in established interaction networks to improve our fundamental knowledge of coral gene function.
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http://dx.doi.org/10.1016/j.tig.2019.11.001 | DOI Listing |
Elife
September 2025
Department of Earth and Environmental Sciences, Paleontology and Geobiology, Ludwig Maximilians-Universität München, Munich, Germany.
The rapid emergence of mineralized structures in diverse animal groups during the late Ediacaran and early Cambrian periods likely resulted from modifications of pre-adapted biomineralization genes inherited from a common ancestor. As the oldest extant phylum with mineralized structures, sponges are key to understanding animal biomineralization. Yet, the biomineralization process in sponges, particularly in forming spicules, is not well understood.
View Article and Find Full Text PDFMol Ecol
September 2025
Department of Ecology, Evolution and Behavior, Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, Jerusalem, Israel.
The class Hexacorallia, encompassing stony corals and sea anemones, plays a critical role in marine ecosystems. Coral bleaching, the disruption of the symbiosis between stony corals and zooxanthellate algae, is driven by seawater warming and further exacerbated by pathogenic microbes. However, how pathogens, especially viruses, contribute to accelerated bleaching remains poorly understood.
View Article and Find Full Text PDFbioRxiv
August 2025
Marine Eco-Evo-Devo Unit, Okinawa Institute of Science and Technology; Okinawa, 904-0495, Japan.
The diverse pigmentation patterns of animals are crucial for predation avoidance and behavioral display, yet mechanisms underlying this diversity remain poorly understood. In zebrafish, Turing models have been proposed to explain stripe patterns, but it is unclear if they apply to other fishes. In anemonefish (, we identified , a gene orthologous to zebrafish and encoding a connexin involved in pigment cell communication, as responsible for the phenotype.
View Article and Find Full Text PDFBiology (Basel)
August 2025
CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China.
The crown-of-thorns starfish (CoTS, spp.), is responsible for a considerable amount of coral loss in the tropical Indo-Pacific region. After decimating coral populations through predation, it is expected that CoTS will face food scarcity before coral recovery.
View Article and Find Full Text PDFEnviron Res
September 2025
Climate Change Cluster, University of Technology Sydney, Ultimo, 007, NSW, Australia.
Loss of oxygen (O) from the world's oceans to physiologically-critical levels ("hypoxia") is an important, yet understudied stressor for coral reefs. However, extreme reef-neighbouring ecosystems such as mangrove lagoons that are routinely subjected to frequent low-pO exposure (i.e.
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