Complete Chloroplast Genomes from : Identity and Variation Among Four Species.

Molecules

Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China.

Published: August 2018


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Article Abstract

The genus , which contains about 30 species around the world and seven species in China, is the source of the medicinal plant , which is commonly used as a hemostatic agent as well as to treat burns and scalds. Here we report the complete chloroplast (cp) genome sequences of four species (, , , and var. ). These four cp genomes exhibit typical quadripartite and circular structures, and are 154,282 to 155,479 bp in length, consisting of large single-copy regions (LSC; 84,405⁻85,557 bp), small single-copy regions (SSC; 18,550⁻18,768 bp), and a pair of inverted repeats (IRs; 25,576⁻25,615 bp). The average GC content was ~37.24%. The four cp genomes harbored 112 different genes arranged in the same order; these identical sections include 78 protein-coding genes, 30 tRNA genes, and four rRNA genes, if duplicated genes in IR regions are counted only once. A total of 39⁻53 long repeats and 79⁻91 simple sequence repeats (SSRs) were identified in the four cp genomes, which provides opportunities for future studies of the population genetics of medicinal plants. A phylogenetic analysis using the maximum parsimony (MP) method strongly supports a close relationship between and var. , followed by , and finally . The availability of these cp genomes provides valuable genetic information for future studies of identification and provides insights into the evolution of the genus .

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225366PMC
http://dx.doi.org/10.3390/molecules23092137DOI Listing

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