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Nonlinear unmixing of hyperspectral reflectance data is one of the key problems in quantitative imaging of painted works of art. The approach presented is to interrogate a hyperspectral image cube by first decomposing it into a set of reflectance curves representing pure basis pigments and second to estimate the scattering and absorption coefficients of each pigment in a given pixel to produce estimates of the component fractions. This two-step algorithm uses a deep neural network to qualitatively identify the constituent pigments in any unknown spectrum and, based on the pigment(s) present and Kubelka-Munk theory to estimate the pigment concentration on a per-pixel basis. Using hyperspectral data acquired on a set of mock-up paintings and a well-characterized illuminated folio from the 15th century, the performance of the proposed algorithm is demonstrated for pigment recognition and quantitative estimation of concentration.
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http://dx.doi.org/10.1002/anie.201805135 | DOI Listing |
Anal Chem
August 2025
School of Physics and Astronomy, University of Exeter, Exeter EX4 4QL, U.K.
Plants are inherently complex systems dynamically interacting at different size scale levels. Spontaneous Raman microscopy links the molecular with the cellular structural level; however, as Raman scattering is a low-probability phenomenon, pixel dwell times for biological applications are not compatible with high-resolution imaging. Due to absorption and autofluorescence interferences, Raman methods are often restricted to pigment-poor regions in plant samples.
View Article and Find Full Text PDFPLoS Biol
July 2025
Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Multiplexed cyclic imaging in expandable tissue gels has been extensively studied to visualize numerous biomolecules at a nanoscale resolution in situ. Previous studies have employed sparse labels, such as DAPI or lectin staining, as registration markers. However, these sparse labels do not adequately capture the full extent of deformation across the entire region of interest.
View Article and Find Full Text PDFSci Rep
July 2025
Vanderbilt Biophotonics Center, Vanderbilt University, Nashville, TN, USA.
Eosinophilic esophagitis (EoE) is an immunoinflammatory condition of the esophagus characterized by an intense eosinophilic inflammation. Given its chronic and progressive course, EoE can lead to esophageal remodeling and dysphagia. Current diagnostic methods require repeated endoscopy to rate the severity of esophageal involvement and several biopsies of the esophageal mucosa for histopathologic confirmation of EoE, which can result in misdiagnosis and diagnostic delays.
View Article and Find Full Text PDFSci Rep
April 2025
Faculty of Information Technology, University of Jyväskylä, Jyväskylä, Finland.
Hyperspectral sensing of phytoplankton, free-living microscopic photosynthetic organisms, offers a comprehensive and scalable method for assessing water quality and monitoring changes in aquatic ecosystems. However, unmixing the intrinsic optical properties of phytoplankton from hyperspectral data is a complex challenge. This research addresses the problem of non-linear unmixing hyperspectral absorbance data of concentrated water samples using Blind (BAE) and Endmember Guided Autoencoder (EGAE).
View Article and Find Full Text PDFLabel-free multiphoton microscopy is a powerful tool for investigating pristine biological specimens. This imaging modality leverages optical signals originating from the nonlinear response of native biomolecules to intense optical radiation, nonlinear signals that allow localizing and quantifying the constituents of specimens, driving applications in biology and medicine. However, since its inception over three decades ago, this approach has operated with a narrowband detection scheme, relying on narrow bandwidths from the entire spectra to derive imaging contrast.
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