Involvement of conformational isomerism in the complexity of the crystal network of 1-(4-nitrophenyl)-1H-1,3-benzimidazole derivatives driven by C-H...A (A = NO, N and π) and orthogonal N...NO and ONO...Csp interactions.

Acta Crystallogr C Struct Chem

Laboratorio de Química Supramolecular y Nanociencias, Unidad Profesional Interdisciplinaria de Biotecnología del Instituto Politécnico Nacional, Av. Acueducto s/n Barrio la Laguna Ticomán, 07340 Mexico City, Mexico.

Published: April 2018


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Article Abstract

A detailed structural analysis of the benzimidazole nitroarenes 1-(4-nitrophenyl)-1H-1,3-benzimidazole, CHNO, (I), 1-(4-nitrophenyl)-2-phenyl-1H-1,3-benzimidazole, CHNO, (II), and 2-(3-methylphenyl)-1-(4-nitrophenyl)-1H-1,3-benzimidazole, CHNO, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp-H...A (A = NO, N and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z' = 2) and (II) (Z' = 4) into tapes, helices and sheets is the result of the additional participation of π-π and n-π* (n = O and N; π* = Csp and N) interactions that contribute to the stabilization of the equi-energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z' = 1) is self-paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2-position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO...Csp and N...NO interactions.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885323PMC
http://dx.doi.org/10.1107/S2053229618003406DOI Listing

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