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The multimodular guanine nucleotide exchange factors (GEFs) of the Dbl family mostly share a tandem Dbl homology (DH) and pleckstrin homology (PH) domain organization. The function of these and other domains in the DH-mediated regulation of the GDP/GTP exchange reaction of the Rho proteins is the subject of intensive investigations. This comparative study presents detailed kinetic data on specificity, activity, and regulation of the catalytic DH domains of four GEFs, namely p115, p190, PDZ-RhoGEF (PRG), and leukemia-associated RhoGEF (LARG). We demonstrate that (i) these GEFs are specific guanine nucleotide exchange factors for the Rho isoforms (RhoA, RhoB, and RhoC) and inactive toward other members of the Rho family, including Rac1, Cdc42, and TC10. (ii) The DH domain of LARG exhibits the highest catalytic activity reported for a Dbl protein till now with a maximal acceleration of the nucleotide exchange by 10(7)-fold, which is at least as efficient as reported for GEFs specific for Ran or the bacterial toxin SopE. (iii) A novel regulatory region at the N terminus of the DH domain is involved in its association with GDP-bound RhoA monitored by a fluorescently labeled RhoA. (iv) The tandem PH domains of p115 and PRG efficiently contribute to the DH-mediated nucleotide exchange reaction. (v) In contrast to the isolated DH or DH-PH domains, a p115 fragment encompassing both the regulator of G-protein signaling and the DH domains revealed a significantly reduced GEF activity, supporting the proposed models of an intramolecular autoinhibitory mechanism for p115-like RhoGEFs.
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http://dx.doi.org/10.1074/jbc.M111.226431 | DOI Listing |
The composition of the primordial genetic material remains uncertain. Studies of duplex structure and stability, and of nonenzymatic template copying chemistry, provide insight into the viability of potentially primordial genetic polymers. Recent work suggests that 2'- deoxyribo-purine nucleotides may have been generated together with ribonucleotides on the early Earth.
View Article and Find Full Text PDFBiochem J
September 2025
Institute of Pharmaceutical Chemistry, Goethe University, Frankfurt , 60438, Germany.
The Rab GTPase switch-2 region is a hotspot for post-translational modifications. Its phosphorylation can determine whether individuals develop Parkinson's disease or not. Other modifications of the same region are catalyzed by enzymes from bacterial pathogens when they infect human cells.
View Article and Find Full Text PDFBMC Genomics
September 2025
Laboratory of Molecular Genetics, Institute of Plant Biology and Biotechnology, Almaty, 050040, Kazakhstan.
Background: Soybean (Glycine max) is a globally important crop, yet its genetic diversity remains underutilized in breeding programs, particularly in emerging production regions such as Kazakhstan. As Kazakhstan expands its soybean cultivation, a detailed understanding of the genetic diversity and population structure of both local and international germplasm is critical for developing regionally adapted cultivars.
Results: This study analyzed 694 soybean accessions - including landraces, modern cultivars, and wild relatives (Glycine soja) - using 80,971 high-quality SNPs obtained via whole-genome resequencing.
Unlabelled: is a human fungal pathogen capable of both -α and α-α mating and sexual reproduction in laboratory settings. However, the extent of -α and α-α sexual reproductions in natural populations remain unexplored. Here we analyzed the whole-genome sequences of 24 environmental strains of from western Saudi Arabia, including one and 23 α isolates, with 15 α isolates belonging to multi-locus sequence type ST160 as defined by their combined DNA sequences at seven loci.
View Article and Find Full Text PDFSci China Life Sci
August 2025
Sichuan Provincial Key Laboratory for Human Disease Gene Study and the Center for Medical Genetics, Department of Laboratory Medicine, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu,
Primary open-angle glaucoma (POAG) is the leading cause of irreversible blindness worldwide, primarily due to the degeneration of retinal ganglion cells (RGCs). In this study, we reported vav guanine nucleotide exchange factor 2 (VAV2) as a POAG-associated gene. Through whole exome sequencing (WES) of 398 Han Chinese POAG patients and 2,010 controls, we discovered nine rare VAV2 variants linked to POAG (P_burden=1.
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