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The configuration of a chiral center in semisynthetic (-)-(2R,5R,5aR,8zeta,9aS)- 2,8-dibromo-2,5,9,9a-tetrahydro-5-hydroxy-5,8,10,10-tetramethyl-6H-2,5a-methano-1-benzoxepin-7(8H)-one (3 or 4), prepared in two steps from (-)-(2R,5R,5aR,7S,8S,9aS)-2, 7-dibromo-8-chloro-2,5,7,8,9,9a-hexahydro-5,8,10,10-tetramethyl-6H-2,5a-methano-1-benzoxepin-5-ol, known as pacifenol 1, has been determined using vibrational circular dichroism (VCD) measurements. The vibrational spectra (IR and VCD) of diastereoisomers 3 and 4 were calculated using density functional theory (DFT) at the B3LYP/DGDZVP level of theory for the two conformers that in each case account for the total energetic distribution found in the first 10 kcal/mol range. The DFT conformational optimization of the 8R diastereoisomer 3 indicates the cyclohexanone exists almost exclusively in a boat conformation with a beta-equatorial bromine atom and an alpha-axial methyl group at the chiral center alpha to the carbonyl group, while for the 8S diastereoisomer 4 a 5:1 conformational distribution in favor of a chair conformation with an alpha-axial bromine atom and a beta-equatorial methyl group is calculated, suggesting due to well-known chair versus boat relative stabilities that the plausible diastereoisomer would be the 8S molecule. A comparison of the IR spectrum of the reaction product with the calculated spectra of 3 and 4 provided no means for the diastereoisomeric assignment, while from comparison of the VCD spectra it became immediately evident that the rearranged molecule possesses the 8R absolute configuration as shown in 3, in concordance with a single crystal X-ray diffraction study that could be refined to an R-factor of 2.9%.
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http://dx.doi.org/10.1002/chir.20801 | DOI Listing |
Nat Prod Res
June 2025
Faculty of Chemistry, University of Science, Ho Chi Minh City, Vietnam.
Two new diastereoisomeric tetrahydrofuranoid-lignans ( and ) were purified from (Taxaceae) roots. Their respective structures were subsequently determined through spectroscopic analysis, together with GIAO NMR chemical shift calculation and DP4+ probability method to assign the relative configurations. A respective assignment of 7 ,8,7',8' and 7 ,8,7',8' was given for their absolute configurations, based on a comparative analysis between measured and calculated ECD data.
View Article and Find Full Text PDFAnal Chim Acta
April 2025
LSPCMIB, CNRS, UMR 5068, Université de Toulouse, 118 route de Narbonne, cedex 9, 31062, Toulouse, France. Electronic address:
Background: The development of robust chiral transition metal complexes is of paramount importance for advanced asymmetric catalysis, diagnostic and therapy, as well as for the emerging field of solid-state luminescent materials. Tricarbonylrhenium(I) complexes are intrinsically chiral, and their association as dinuclear molecules introduces additional layers of diastereoisomerism and enantiomerism, enhancing their versatility for potential applications. Up to now, separation of dinuclear complexes has made it possible to isolate diasteroisomers or enantiomers bearing a second chiral center other than rhenium.
View Article and Find Full Text PDFPhytochemistry
March 2023
Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33, 18000, Niš, Serbia. Electronic address:
2,6-Cyclocuparan-3-ols are chemical markers and major volatiles of several liverwort species. Conflicting reports on the structures of these cyclocuparanols can be found in the literature-different research groups assigned the same spectral data to different structures, yet these inconsistencies were never addressed, let alone satisfactorily explained. Following the isolation of all four diastereoisomeric cyclocuparanols from Marchantia polymorpha, their relative and absolute configurations were extensively studied by chemical and spectroscopic methods and definite stereostructures were proposed.
View Article and Find Full Text PDFPhytochemistry
April 2022
Universidade Federal de Santa Maria, Departamento de Química, CEP, 97105-900, Santa Maria, RS, Brazil. Electronic address:
A reinvestigation of the chemical constituents of the stem barks of Scutia buxifolia, a member of the Rhamnaceae, resulted, along with the known alkaloids scutianine C and scutianene L, in the isolation of three undescribed diastereoisomeric alkaloids - scutianine N, 27-epi-scutianine N and 3, 4, 7-tri-epi-scutianine N -, one undescribed non macrocyclic alkaloid - scutianine Q - and a neutral compound -scutianene M. Their structures were determined using extensive NMR techniques and HRMS. The absolute configurations of the stereogenic centers of the three diastereoisomeric alkaloids have been assigned by gas chromatography employing modified cyclodextrins as chiral stationary phases.
View Article and Find Full Text PDFActa Crystallogr E Crystallogr Commun
December 2021
School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, United Kingdom.
During the racemization of a novel pharmaceutical spiro-cyclic imidazole-amine compound, namely, 6'-bromo--(6'-bromo-4-meth-oxy-4''-methyl-3'-di-spiro[cyclo-hexane-1,2'-indene-1',2''-imidazol]-5''-yl)-4-meth-oxy-4''-methyl-3'-di-spiro-[cyclo-hexane-1,2'-indene-1',2''-imidazol]-5''-imine, CHBrNO, two impurities were isolated. These impurities were clearly dimers from mass spectroscopic analysis, however single-crystal diffraction characterization was required for the assignment of stereochemistry. The single-crystal diffraction results revealed subtly different structures to those proposed, due to an unexpected proton transfer.
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