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Background: Bacteria used as indicators for pathogenic microorganisms in water are not considered adequate as enteric virus indicators. Surface water from a tropical high-altitude system located in Mexico City that receives rainwater, treated and non-treated wastewater used for irrigation, and groundwater used for drinking, was studied.
Methods: The presence of enterovirus, rotavirus, astrovirus, coliphage, coliform bacteria, and enterococci was determined during annual cycles in 2001 and 2002. Enteric viruses in concentrated water samples were detected by reverse transcriptase-polymerase chain reaction (RT-PCR). Coliphages were detected using the double agar layer method. Bacteria analyses of the water samples were carried out by membrane filtration.
Results: The presence of viruses and bacteria in the water used for irrigation showed no relationship between current bacterial indicator detection and viral presence. Coliphages showed strong association with indicator bacteria and enterovirus, but weak association with other enteric viruses. Enterovirus and rotavirus showed significant seasonal differences in water used for irrigation, although this was not clear for astrovirus.
Conclusion: Coliphages proved to be adequate faecal pollution indicators for the irrigation water studied. Viral presence in this tropical high-altitude system showed a similar trend to data previously reported for temperate zones.
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http://dx.doi.org/10.1186/1476-069X-8-49 | DOI Listing |
Infect Genet Evol
September 2025
Next Generation Sequencing Unit, School of Biomedical Sciences, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa; Division of Virology, School of Pathology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa. Electronic address: N
The sub-Saharan African region bears the highest burden of rotavirus-associated morbidity and mortality, with substantial genetic diversity observed in circulating strains despite vaccine introduction. The G8 genotype, originally predominant in bovine strains, has increasingly become prevalent in humans, suggesting a possible interface of animal-to-human transmission and highlighting its role in African strain diversity. In this study, we performed whole genome sequencing and evolutionary analysis of 21 archival G8P[4] strains collected through gastroenteritis surveillance in South Africa between 2009 and 2021 from children under five years of age.
View Article and Find Full Text PDFVet Microbiol
September 2025
Center for Food Animal Health, Department of Animal Sciences, College of Food, Agricultural and Environmental Sciences, The Ohio State University, Wooster, OH 44691, USA; Department of Veterinary Preventive Medicine, College of Veterinary Medicine, The Ohio State University, Columbus, OH 43210, USA.
Porcine sapovirus (PoSaV) is an emerging enteric pathogen in swine industry, primarily associated with diarrhea in weaning and post-weaning pigs. To date, eight genogroups of PoSaVs have been identified, with genogroup III (GIII) being the most prevalent worldwide. However, the isolation of field strains in various cell lines has achieved limited success, hindering progress in PoSaV research.
View Article and Find Full Text PDFJ Virol
September 2025
Key Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Chinese Academy of Agricultural Sciences, Institute of Special Animal and Plant Sciences, Changchun, China.
Raccoon dog parvovirus (RDPV) is a highly contagious pathogen causing severe hemorrhagic enteritis that is fatal in young raccoon dogs. Since 2016, epidemiological investigations have documented recurrent outbreaks of RDPV, exhibiting heightened virulence; however, the molecular mechanisms driving this increased pathogenicity remain poorly understood. In this study, an alignment of 67 complete RDPV sequences identified two high-frequency amino acid mutations at positions 27 and 297 in the VP2 capsid protein that distinguish RDPV strains from before and after the 2016 outbreak.
View Article and Find Full Text PDFVet Microbiol
August 2025
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China. Electronic address:
Transmissible gastroenteritis virus (TGEV) is one of the major pathogen causing swine diarrhea, inducing acute severe atrophic enteritis and lethal watery diarrhea in neonatal piglets with up to 100 % mortality, resulting in significant economic losses to the swine industry. Angiotensin-converting enzyme 2 (ACE2) is known as an invasion receptor for SARS-CoV-2, but its role in TGEV infection remains unclear, and the current understanding of TGEV infection mechanisms is incomplete. In this study, we identified an important role for porcine ACE2 (pACE2) in TGEV infection.
View Article and Find Full Text PDFMicrobiol Resour Announc
September 2025
College of Health Solutions, Arizona State University, Phoenix, Arizona, USA.
We report nine nearly complete genome sequences (both segments) recovered from stool samples of pediatric diarrhea patients admitted to Kilifi County Hospital, coastal Kenya. This will be an important resource for monitoring infections in humans.
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