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New protein sequences are deposited in databases at an accelerating pace; however, many of these are homologous to known proteins and could be considered redundant. If all historical releases of the protein database are analysed using the original sequence-clustering procedure described here, the fraction of newly sequenced proteins that are redundant is increasing. We interpret this as an indication that the sequencing of the Earth's proteome--the complete set of proteins on Earth--is approaching completion. We estimate the approximate size of the Earth's proteome to be 5 million sequences, most of which will be identified during the next 5 years. As the Earth's proteome nears completion, cluster analysis of the protein database will become essential to identify under-explored taxa to which future sequencing efforts should be directed and to focus research on protein families without experimental characterization.
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http://dx.doi.org/10.1038/sj.embor.7401117 | DOI Listing |
NPJ Biofilms Microbiomes
September 2025
GFZ Helmholtz Centre for Geosciences, Potsdam, Germany.
Eukaryotic algae-dominated microbiomes thrive on the Greenland Ice Sheet (GrIS) in harsh environmental conditions, including low temperatures, high light, and low nutrient availability. Chlorophyte algae bloom on snow, while streptophyte algae dominate bare ice surfaces. Empirical data about the cellular mechanisms responsible for their survival in these extreme conditions are scarce.
View Article and Find Full Text PDFElife
September 2025
Department of Earth and Environmental Sciences, Paleontology and Geobiology, Ludwig Maximilians-Universität München, Munich, Germany.
The rapid emergence of mineralized structures in diverse animal groups during the late Ediacaran and early Cambrian periods likely resulted from modifications of pre-adapted biomineralization genes inherited from a common ancestor. As the oldest extant phylum with mineralized structures, sponges are key to understanding animal biomineralization. Yet, the biomineralization process in sponges, particularly in forming spicules, is not well understood.
View Article and Find Full Text PDFProteomics
August 2025
European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Alzheimer's disease (AD) is a progressive neurodegenerative disorder that leads to dementia. Many cases are diagnosed annually and there is no currently available cure. Understanding the underlying disease biology of AD through the study of molecular networks, particularly by mapping clinical variants to tissue-specific interactomes and regulatory macromolecular assemblies, offers a promising avenue to elucidate altered disease pathways.
View Article and Find Full Text PDFJ Ind Microbiol Biotechnol
August 2025
Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.
Agarwood is a highly valuable non-timber forest product mainly derived from the Aquilaria genus, widely traded in the perfumery, religious items, and traditional medicine industries. Naturally, agarwood forms within the xylem as part of the tree's defense mechanism against environmental stressors and microbial infection. The escalating demand for agarwood has led to the overexploitation of Aquilaria species, with some now classified as critically endangered.
View Article and Find Full Text PDFBioresour Technol
December 2025
Zhongyuan Critical Metals Laboratory, Zhengzhou, Henan 450001, China; State Key Laboratory of Critical Metals Beneficiation, Metallurgy and Purification, Zhengzhou, Henan 450001, China; School of Chemical Engineering, Zhengzhou University, Zhengzhou, Henan 450001, China.
Problem: The recovery of scandium (Sc), a critical rare earth element, is hampered by its dispersed geological occurrence and the economic and environmental drawbacks of conventional methods. While microbial extracellular polymeric substances (EPS) are promising biosorbents, their practical application is limited by insufficient target-specificity in complex matrices.
Solution: Inspired by bacterial adaptive responses, this study employed targeted scandium stress to modulate the composition and structure of EPS secreted by Methylobacterium extorquens, thereby enhancing the selective adsorption of scandium.