Functional near-infrared spectroscopy (fNIRS) is an increasingly popular neuroimaging technique that measures cortical hemodynamic activity in a non-invasive and portable fashion. Although the fNIRS community has been successful in disseminating open-source processing tools and a standard file format (SNIRF), reproducible research and sharing of fNIRS data amongst researchers has been hindered by a lack of standards and clarity over how study data should be organized and stored. This problem is not new in neuroimaging, and it became evident years ago with the proliferation of publicly available neuroimaging datasets.
View Article and Find Full Text PDFImaging Neurosci (Camb)
March 2024
We present an extension to the Brain Imaging Data Structure (BIDS) for motion data. Motion data is frequently recorded alongside human brain imaging and electrophysiological data. The goal of Motion-BIDS is to make motion data interoperable across different laboratories and with other data modalities in human brain and behavioral research.
View Article and Find Full Text PDFJ Exp Psychol Gen
March 2024
People routinely make decisions based on samples of numerical values. A common conclusion from the literature in psychophysics and behavioral economics is that observers subjectively compress magnitudes, such that extreme values have less sway over people's decisions than prescribed by a normative model (underweighting). However, recent studies have reported evidence for anti-compression, that is, the relative overweighting of extreme values.
View Article and Find Full Text PDFPLoS Comput Biol
December 2022
When judging the average value of sample stimuli (e.g., numbers) people tend to either over- or underweight extreme sample values, depending on task context.
View Article and Find Full Text PDFEmpirical observations of how labs conduct research indicate that the adoption rate of open practices for transparent, reproducible, and collaborative science remains in its infancy. This is at odds with the overwhelming evidence for the necessity of these practices and their benefits for individual researchers, scientific progress, and society in general. To date, information required for implementing open science practices throughout the different steps of a research project is scattered among many different sources.
View Article and Find Full Text PDFThe Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS.
View Article and Find Full Text PDFWhen acquiring information about choice alternatives, decision makers may have varying levels of control over which and how much information they sample before making a choice. How does control over information acquisition affect the quality of sample-based decisions? Here, combining variants of a numerical sampling task with neural recordings, we show that control over when to stop sampling can enhance (i) behavioral choice accuracy, (ii) the build-up of parietal decision signals, and (iii) the encoding of numerical sample information in multivariate electroencephalogram patterns. None of these effects were observed when participants could only control which alternatives to sample, but not when to stop sampling.
View Article and Find Full Text PDFThe Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.
View Article and Find Full Text PDFEvent-related data analysis plays a central role in EEG and MEG (MEEG) and other neuroimaging modalities including fMRI. Choices about which events to report and how to annotate their full natures significantly influence the value, reliability, and reproducibility of neuroimaging datasets for further analysis and meta- or mega-analysis. A powerful annotation strategy using the new third-generation formulation of the Hierarchical Event Descriptors (HED) framework and tools (hedtags.
View Article and Find Full Text PDFAs the global health crisis unfolded, many academic conferences moved online in 2020. This move has been hailed as a positive step towards inclusivity in its attenuation of economic, physical, and legal barriers and effectively enabled many individuals from groups that have traditionally been underrepresented to join and participate. A number of studies have outlined how moving online made it possible to gather a more global community and has increased opportunities for individuals with various constraints, e.
View Article and Find Full Text PDFModern experimental research often relies on the synchronization of different events prior to data analysis. One way of achieving synchronization involves marking distinct events with electrical pulses (event markers or "TTL pulses"), which are continuously recorded with research hardware, and can later be temporally aligned. Traditionally, this event marking was often performed using the parallel port in standard personal computers.
View Article and Find Full Text PDFJ Cereb Blood Flow Metab
August 2020
It is a growing concern that outcomes of neuroimaging studies often cannot be replicated. To counteract this, the magnetic resonance (MR) neuroimaging community has promoted acquisition standards and created data sharing platforms, based on a consensus on how to organize and share MR neuroimaging data. Here, we take a similar approach to positron emission tomography (PET) data.
View Article and Find Full Text PDFThe Brain Imaging Data Structure (BIDS) is a community-driven specification for organizing neuroscience data and metadata with the aim to make datasets more transparent, reusable, and reproducible. Intracranial electroencephalography (iEEG) data offer a unique combination of high spatial and temporal resolution measurements of the living human brain. To improve internal (re)use and external sharing of these unique data, we present a specification for storing and sharing iEEG data: iEEG-BIDS.
View Article and Find Full Text PDFThe Brain Imaging Data Structure (BIDS) project is a rapidly evolving effort in the human brain imaging research community to create standards allowing researchers to readily organize and share study data within and between laboratories. Here we present an extension to BIDS for electroencephalography (EEG) data, EEG-BIDS, along with tools and references to a series of public EEG datasets organized using this new standard.
View Article and Find Full Text PDFJ Open Source Softw
December 2019
The development of the Brain Imaging Data Structure (BIDS; Gorgolewski et al., 2016) gave the neuroscientific community a standard to organize and share data. BIDS prescribes file naming conventions and a folder structure to store data in a set of already existing file formats.
View Article and Find Full Text PDFJ Open Source Softw
August 2019
Unlabelled: Backround: Night-time agitation is a frequent symptom of dementia. It often causes nursing home admission and has been linked to circadian rhythm disturbances. A positive influence of light interventions on night-time agitation was shown in several studies.
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