Publications by authors named "Sivakumar Sambandan"

In neurons, autophagosome biogenesis occurs mainly in distal axons, followed by maturation during retrograde transport. Autophagosomal growth depends on the supply of membrane lipids which requires small vesicles containing ATG9, a lipid scramblase essential for macroautophagy/autophagy. Here, we show that ATG9-containing vesicles are enriched in synapses and resemble synaptic vesicles in size and density.

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Super-resolution techniques have achieved localization precisions in the nanometer regime. Here we report all-optical, room temperature localization of fluorophores with precision in the Ångström range. We built on the concept of MINSTED nanoscopy where precision is increased by encircling the fluorophore with the low-intensity central region of a stimulated emission depletion (STED) donut beam while constantly increasing the absolute donut power.

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Vesicular transporters (VTs) define the type of neurotransmitter that synaptic vesicles (SVs) store and release. While certain mammalian neurons release multiple transmitters, it is not clear whether the release occurs from the same or distinct vesicle pools at the synapse. Using quantitative single-vesicle imaging, we show that a vast majority of SVs in the rodent brain contain only one type of VT, indicating specificity for a single neurotransmitter.

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Article Synopsis
  • Axon branching is essential for forming neuronal networks, and VEGF (Vascular Endothelial Growth Factor) plays a key role in signaling to neurons to influence their development and function.* -
  • In mice, both VEGF and its receptor VEGFR2 are expressed in developing hippocampal neurons, particularly in the CA3 region, and activating this signaling increases axon branching.* -
  • However, while increased axon branching occurs with both activated and inactivated VEGFR2, the latter leads to less mature branches that form fewer functional connections, highlighting the need for balanced VEGF/VEGFR2 signaling in neuronal development.*
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MicroRNAs (miRNAs) regulate gene expression by binding to target messenger RNAs (mRNAs) and preventing their translation. In general, the number of potential mRNA targets in a cell is much greater than the miRNA copy number, complicating high-fidelity miRNA-target interactions. We developed an inducible fluorescent probe to explore whether the maturation of a miRNA could be regulated in space and time in neurons.

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The neuronal transcriptome changes dynamically to adapt to stimuli from the extracellular and intracellular environment. In this study, we adapted for the first time a click chemistry technique to label the newly synthesized RNA in cultured hippocampal neurons and intact larval zebrafish brain. Ethynyl uridine (EU) was incorporated into neuronal RNA in a time- and concentration-dependent manner.

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N-glycosylation - the sequential addition of complex sugars to adhesion proteins, neurotransmitter receptors, ion channels and secreted trophic factors as they progress through the endoplasmic reticulum and the Golgi apparatus - is one of the most frequent protein modifications. In mammals, most organ-specific N-glycosylation events occur in the brain. Yet, little is known about the nature, function and regulation of N-glycosylation in neurons.

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Article Synopsis
  • Homeostatic scaling modifies synaptic strength based on significant input changes, leading to either up-scaling or down-scaling in neurons.
  • Researchers used a method called BONCAT to label and examine nearly 6,000 newly synthesized proteins in cultured rat hippocampal neurons during these scaling processes.
  • The study found that while the overall number of proteins remained constant, around 300 proteins showed different regulation linked to critical functions in neuron development and are associated with various neurological diseases like schizophrenia and Parkinson's disease.
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Article Synopsis
  • Circular RNAs (circRNAs) are prevalent in mouse brain tissues, especially those linked to synaptic proteins.
  • CircRNAs are more abundant in the neuropil compared to their corresponding mRNA isoforms, suggesting a specialized role in neurons.
  • Their abundance changes during critical periods such as synaptogenesis and in response to neuronal activity, implying they may play a role in regulating synaptic function.
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Fast-spiking perisomatic-inhibitory interneurons (PIIs) receive convergent excitation and mediate both feedforward and feedback inhibition in cortical microcircuits. However, it remains poorly understood how convergent excitatory inputs recruit PIIs to produce precisely timed inhibition. Here, we analyzed the interaction of inputs from the entorhinal cortex [perforant path (PP)] and from local granule cells [mossy fibers (MFs)] onto PIIs in the rat dentate gyrus (DG).

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