Publications by authors named "Sascha Knauf"

Lumpy skin disease (LSD) is one of the most economically important transboundary animal diseases that emerged in Bangladesh in 2019. It has a significant economic impact on household cattle owners in rural settings in Bangladesh. A cross-sectional study was undertaken in selected areas of the Mymensingh districts of Bangladesh between July 2021 and May 2023.

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Background: Treponema pallidum subspecies pertenue (TPE) is the causative agent of human and nonhuman primate (NHP) yaws infection. The discovery of yaws bacterium in wild populations of NHPs opened the question of transmission mechanisms within NHPs, and this work aims to take a closer look at the transmission of the disease.

Methodology/principal Findings: Our study determined eleven whole TPE genomes from NHP isolates collected from three national parks in Tanzania: Lake Manyara National Park (NP), Serengeti NP, and Ruaha NP.

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Crimean-Congo haemorrhagic fever (CCHF) is a viral zoonotic disease endemic to regions of Africa, the Balkans, the Middle East, and Asia, with increasing reports of cases in southern Europe. Human transmission occurs primarily through the bite of infected ticks and by body fluids from infected human. Crimean-Congo haemorrhagic fever virus (CCHFV) affects a broad host range, including both domestic and wild vertebrates.

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In the post-COVID-19 era, stakeholders, including policymakers, funders, and the public, are increasingly seeking for a cross-sectoral systems-based approach to health risks extending beyond conventional measures. Anchored on three health pillars -human, animal, and environmental- One Health offers a promising framework to effectively address this demand. While some nations have already implemented national One Health strategic plans, European countries, in general, are lagging behind the global agenda.

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Background: To meet the WHO target of eradicating yaws by 2030, highly sensitive and specific diagnostic tools are needed. A multiplex Treponema pallidum-Haemophilus ducreyi loop-mediated isothermal amplification (TPHD-LAMP) test holds promise as a near-patient diagnostic tool for yaws and H ducreyi. We conducted a prospective evaluation in Cameroon, Côte d'Ivoire, Ghana, and the Republic of the Congo to determine the diagnostic accuracy of the TPHD-LAMP test, as well as to assess its acceptability, feasibility, and cost.

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Article Synopsis
  • Integrated approaches to mapping skin Neglected Tropical Diseases (NTDs) may optimize resource allocation, but extensive data covering multiple endemic countries was previously lacking.
  • Between March 2021 and March 2023, integrated case searches were conducted in Cameroon, Côte d'Ivoire, and Ghana, screening over 61,000 individuals for various skin conditions including yaws and other NTDs.
  • The findings revealed that 18.6% of those screened had skin lesions, with the majority being children; yaws was confirmed in a varying proportion of cases across the three countries, while scabies and fungal infections were the most commonly diagnosed conditions.
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  • The study identifies two types of treponemes infecting lagomorphs: Treponema paraluisleporidarum ecovar Cuniculus (TPeC), affecting rabbits, and ecovar Lepus (TPeL), affecting hares, with a focus on the complete genome sequence of TPeL from a mountain hare in Sweden.
  • Researchers successfully sequenced nearly the entire genome of TPeL, revealing similarities and differences between TPeL and TPeC, including notable gene variations that could influence how these pathogens adapt to their hosts.
  • Phylogenetic analysis indicated that the TPeL isolate from the European brown hare is more distantly related to TPeC than the other TPeL
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The present study investigated the seropositivity rate of Hepatitis E virus (HEV) in domestic and working animals in Namibia, which included dogs, cats, horses, and donkeys. HEV poses a growing threat as a significant cause of human hepatitis globally and has several genotypes of varying zoonotic potential. As epidemiological data on the seroprevalence of HEV in Namibia is scarce, a serosurvey was conducted on archived serum samples of 374 dogs, 238 cats, 98 horses, and 60 donkeys collected between 2018 and 2022 from different regions, to assess the potential of these animals as sources of HEV infection.

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Article Synopsis
  • - Yaws, caused by the bacterium Treponema pallidum ssp. pertenue, is a major health issue in tropical West Africa and the South Pacific, particularly impacting children in areas lacking hygiene and sanitation.
  • - A study in Ghana, Cameroon, and Côte d'Ivoire found diverse beliefs about yaws transmission among locals, with many attributing it to germs or contaminated water, while some linked it to witchcraft, and a low percentage recognized person-to-person contact as a method of transmission.
  • - Most participants preferred seeking care from hospitals or healthcare professionals if diagnosed with yaws, but there was a significant reliance on traditional healers in Côte d'Ivoire, highlighting the necessity for increased community education and awareness
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Myxoma virus (MYXV) is a Leporipoxvirus (genus) belonging to the family Poxviridae; it is characterised by a genome of approximately 161 kb dsDNA encoding for several proteins that play an essential role in both host spectrum determination and immunomodulation. The healthy reservoir of the virus is spp. At the same time, in wild and domestic European rabbits (), MYXV is the etiologic agent of myxomatosis, a disease with an extremely high mortality rate.

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Background: MDR pathogens including ESBL- and/or carbapenemase-producing (ESBL-PE and CPE) increasingly occur worldwide in the One Health context.

Objectives: This proof-of-principle study investigated the occurrence of ESBL-PE in surface water in the Ashanti Region in Ghana, sub-Saharan Africa (SSA), and investigated their additional genotypic and phenotypic antimicrobial resistance features as part of the Surveillance Outbreak Response Management and Analysis System (SORMAS).

Methods: From 75 water samples overall, from nine small to medium-sized river streams and one pond spatially connected to a channelled water stream in the greater area of Kumasi (capital of the Ashanti Region in Ghana) in 2021, we isolated 121 putative ESBL-PE that were subsequently subjected to in-depth genotypic and phenotypic analysis.

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Article Synopsis
  • * Conducted in Cameroon, the research included 443 participants, revealing a 30.3% prevalence of HD in ulcers and 8.6% in asymptomatic individuals, while Treponema pallidum (TP) was found at a lower rate of 5.2%.
  • * Risk factors included gender parity in HD ulcer cases and physical proximity to confirmed cases, with findings indicating that HD is the most common cause of skin ulcers in the studied areas, warranting further research into asymptomatic carriage and disease transmission. *
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  • Syphilis is an ancient disease caused by two closely related bacteria, with extensive research on human syphilis but limited knowledge regarding its impact on lagomorphs (like rabbits).
  • Comparative studies are necessary to understand the coevolution of hosts and pathogens, especially using hare populations that are naturally infected with the syphilis-causing bacteria.
  • This research provides new data on the genetic diversity of the bacteria, specifically highlighting variations in hypervariable regions that have not been previously documented in the human strain.
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  • Noncoding DNA helps scientists understand how genes work and how they relate to diseases in humans.
  • Researchers studied the DNA of many primates to find specific regulatory parts that are important for gene regulation.
  • They discovered a lot of these regulatory elements in humans that are different from those in other mammals, which can help explain human traits and health issues.
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Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as an important evolutionary force. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterizes their evolutionary history and identify ancient hybridization across deeply divergent lineages that differ in ecology, morphology, and karyotypes. Some hybridization events resulted in mitochondrial introgression between distant lineages, likely facilitated by cointrogression of coadapted nuclear variants.

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Background: The potential for the transfer of zoonotic diseases, including bacteria between human and non-human primates (NHPs), is expected to rise. It is posited that NHPs that live in close contact with humans serve as sentinels and reservoirs for antibiotic-resistant bacteria.

Objectives: The objective was to characterize the oral and rectal bacteria in Ghanaian NHPs and profile the antimicrobial susceptibility of the isolated bacteria.

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  • Treponema pallidum subsp. pertenue (TPE) causes yaws, a disease currently found in 13 countries, and a resurgence has been noted due to lack of surveillance after a past eradication effort.
  • This study analyzed the genomes of TPE strains from nonhuman primates (NHPs) and compared them to those infecting humans, discovering no consistent genomic differences between the two.
  • Findings indicate that NHPs can carry TPE strains similar to humans, emphasizing the importance of ongoing yaws surveillance despite the low risk of transmission between species.
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The rich diversity of morphology and behavior displayed across primate species provides an informative context in which to study the impact of genomic diversity on fundamental biological processes. Analysis of that diversity provides insight into long-standing questions in evolutionary and conservation biology and is urgent given severe threats these species are facing. Here, we present high-coverage whole-genome data from 233 primate species representing 86% of genera and all 16 families.

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Personalized genome sequencing has revealed millions of genetic differences between individuals, but our understanding of their clinical relevance remains largely incomplete. To systematically decipher the effects of human genetic variants, we obtained whole-genome sequencing data for 809 individuals from 233 primate species and identified 4.3 million common protein-altering variants with orthologs in humans.

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  • Baboons, a diverse group of catarrhine monkeys, have undergone hybridization between different phylogenetic species, making their genetic makeup complex.
  • A study used whole-genome sequencing from 225 wild baboons across 19 locations to explore their population genetics and interspecies gene flow, revealing intricate patterns of admixture and population structure.
  • The findings highlight a baboon population linked to three distinct lineages and uncover the evolutionary processes that create discrepancies between genetic relationships obtained from maternal and paternal inheritance, including potential genes affecting unique species traits.
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The COVID-19 pandemic and the increasing occurrence of monkeypox (mpox) diseases outside Africa have illustrated the vulnerability of populations to zoonotic pathogens. In addition, other viral zoonotic pathogens have gained importance in recent years.This review article addresses six notifiable viral zoonotic pathogens as examples to highlight the need for the One Health approach in order to understand the epidemiology of the diseases and to derive recommendations for action by the public health service.

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Unlabelled: Personalized genome sequencing has revealed millions of genetic differences between individuals, but our understanding of their clinical relevance remains largely incomplete. To systematically decipher the effects of human genetic variants, we obtained whole genome sequencing data for 809 individuals from 233 primate species, and identified 4.3 million common protein-altering variants with orthologs in human.

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Article Synopsis
  • Baboons display significant morphological and behavioral diversity, with hybridization among different species influencing their genetics.
  • Researchers analyzed high-coverage whole genome sequences from 225 baboons across 19 locations to understand population dynamics and gene flow between species.
  • The study identified a unique baboon population with mixed genetic origins and uncovered ancient and recent processes that affect genetic relationships among individuals and species.
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Background: Treponema pallidum (TP) is a spirochaete bacterium with subspecies that in humans cause syphilis (subsp. pallidum), bejel (subsp. endemicum) and yaws (subsp.

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Yaws is a chronic infection caused by the bacterium Treponema pallidum susp. pertenue (TPE) that was thought to be an exclusive human pathogen but was recently found and confirmed in nonhuman primates. In this paper, we develop the first compartmental ODE model for TPE infection with treatment of wild olive baboons.

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