Publications by authors named "Rafael L Assis"

Plants cope with the environment by displaying large phenotypic variation. Two spectra of global plant form and function have been identified: a size spectrum from small to tall species with increasing stem tissue density, leaf size, and seed mass; a leaf economics spectrum reflecting slow to fast returns on investments in leaf nutrients and carbon. When species assemble to communities it is assumed that these spectra are filtered by the environment to produce community level functional composition.

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Unlike most rivers globally, nearly all lowland Amazonian rivers have unregulated flow, supporting seasonally flooded floodplain forests. Floodplain forests harbor a unique tree species assemblage adapted to flooding and specialized fauna, including fruit-eating fish that migrate seasonally into floodplains, favoring expansive floodplain areas. Frugivorous fish are forest-dependent fauna critical to forest regeneration via seed dispersal and support commercial and artisanal fisheries.

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We describe the geographical variation in tree species composition across Amazonian forests and show how environmental conditions are associated with species turnover. Our analyses are based on 2023 forest inventory plots (1 ha) that provide abundance data for a total of 5188 tree species. Within-plot species composition reflected both local environmental conditions (especially soil nutrients and hydrology) and geographical regions.

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Biodiversity data, particularly species occurrence and abundance, are indispensable for testing empirical hypothesis in natural sciences. However, datasets built for research programmes do not often meet FAIR (findable, accessible, interoperable and reusable) principles, which raises questions about data quality, accuracy and availability. The 21 century has markedly been a new era for data science and analytics and every effort to aggregate, standardise, filter and share biodiversity data from multiple sources have become increasingly necessary.

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Article Synopsis
  • Amazonia's floodplain system is the largest and most biodiverse, but our understanding of its forest species and their unique roles is still limited, especially as changing flood patterns impact these communities.
  • About one-sixth of the tree diversity in Amazonia is specifically adapted to live in floodplain environments, indicating a significant ecological specialization within these forests.
  • The study emphasizes that the unique composition of floodplain forests is influenced by regional flooding patterns, highlighting the necessity of maintaining overall hydrological health to ensure the survival of Amazon's tree diversity and its essential ecosystem functions.
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Trees structure the Earth's most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge.

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Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness.

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  • Indigenous societies have occupied the Amazon for over 12,000 years, but their impact on the forest is still not fully understood.
  • New LIDAR technology has helped discover 24 pre-Columbian earthworks hidden under the forest, suggesting many more archaeological sites may exist.
  • The presence of 53 domesticated tree species linked to these earthworks indicates past human management of the forest, highlighting the significant influence ancient societies had on Amazonian ecosystems.
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In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important constraints via predictions using least biased probability distributions. We apply it to over two thousand hectares of Amazonian tree inventories across seven forest types and thirteen functional traits, representing major global axes of plant strategies.

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  • The productivity of rainforests, particularly in the Amazon, has been debated in relation to phosphorus availability, as previous experiments haven't firmly established phosphorus as the primary limiting factor, though nitrogen response has been similar.
  • Recent findings indicated that in an old-growth Amazon rainforest with low phosphorus soil, productivity increased significantly only with phosphorus fertilization, showcasing a clear link.
  • The observed benefits in fine root and canopy productivity highlight that phosphorus limitations could affect the Amazon's response to climate change and carbon sequestration efforts.
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  • Research discusses how current global climate models are based on air temperatures but fail to capture the soil temperatures beneath vegetation where many species thrive.
  • New global maps present soil temperature and bioclimatic variables at 1-km resolution for specific depths, revealing that mean annual soil temperatures can differ significantly from air temperatures by up to 10°C.
  • The findings indicate that relying on air temperature could misrepresent climate impacts on ecosystems, especially in colder regions, highlighting the need for more precise soil temperature data for ecological studies.
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Soil nutrient availability can strongly affect root traits. In tropical forests, phosphorus (P) is often considered the main limiting nutrient for plants. However, support for the P paradigm is limited, and N and cations might also control tropical forests functioning.

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Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity.

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Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions.

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Article Synopsis
  • Species distribution models (SDMs), like MaxEnt, often rely on natural history collections (NHCs) for data, but these collections can be spatially biased, affecting model accuracy.
  • A study tested the relationship between NHC distribution and a spatial abundance model (IDW) for Amazonian tree species, finding a weak positive correlation for most species analyzed.
  • The proposed new pipeline effectively reduced NHC inconsistencies and trimmed unnecessary data, offering a more conservative estimate of species occupancy, which is vital for large biodiversity assessments and conservation status evaluations.
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Wetlands harbor an important compliment of regional plant diversity, but in many regions data on wetland diversity and composition is still lacking, thus hindering our understanding of the processes that control it. While patterns of broad-scale terrestrial diversity and composition typically correlate with contemporary climate it is not clear to what extent patterns in wetlands are complimentary, or conflicting. To elucidate this, we consolidate data from wetland forest inventories in Brazil and examine patterns of diversity and composition along temperature and rainfall gradients spanning five biomes.

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Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree species are likely to qualify as globally threatened under International Union for Conservation of Nature (IUCN) Red List criteria. If confirmed, these results would increase the number of threatened plant species on Earth by 22%.

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The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher's alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between ∼ 40,000 and ∼ 53,000, i.e.

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The vast extent of the Amazon Basin has historically restricted the study of its tree communities to the local and regional scales. Here, we provide empirical data on the commonness, rarity, and richness of lowland tree species across the entire Amazon Basin and Guiana Shield (Amazonia), collected in 1170 tree plots in all major forest types. Extrapolations suggest that Amazonia harbors roughly 16,000 tree species, of which just 227 (1.

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Fine root morphological traits and distribution, arbuscular mycorrhizal (AM) fungi, soil fertility, and nutrient concentration in fine root tissue were compared in sites under different successional phases: grass plants, secondary forest, and mature forest in Londrina county, Paraná state, southern Brazil. Soil cores were collected randomly at the 0-10- and 10-20-cm depths in three quadrants (50 m2) in each site. Plants from the different successional stages displayed high differences in fine root distribution, fine root traits, and mycorrhizal root colonization.

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