Environmental protection strategies often rely on aboveground biodiversity indicators for prioritising conservation efforts. However, substantial biodiversity exists belowground, and it remains unclear whether aboveground diversity hotspots are indicative of high soil biodiversity. Using geospatial layers of vascular plant, arbuscular mycorrhizal fungi, and ectomycorrhizal fungi alpha diversity, we map plant-fungal diversity associations across different scales and evaluate evidence for potential correlation drivers.
View Article and Find Full Text PDFMycorrhizal fungi are ecosystem engineers that sustain plant life and help regulate Earth's biogeochemical cycles. However, in contrast to plants and animals, the global distribution of mycorrhizal fungal biodiversity is largely unknown, which limits our ability to monitor and protect key underground ecosystems. Here we trained machine-learning algorithms on a global dataset of 25,000 geolocated soil samples comprising >2.
View Article and Find Full Text PDFArbuscular mycorrhizal (AM) fungi are fundamental to planetary health, enhancing plant nutrient uptake, stabilizing soils, and supporting biodiversity. Due to their prevalence and ecological importance, AM fungi are critical to achieving the environmental targets within the United Nations (UN) Sustainability Development Goals (SDGs) framework, including SDG 15: Life on Land. Despite these fungi engaging in the most widespread and ancient plant-microbe symbiosis, many fundamental aspects of the biogeography of AM fungi remain poorly resolved.
View Article and Find Full Text PDFBreakthroughs in DNA sequencing have upended our understanding of fungal diversity. Only ∼155,000 of the 2-3 million fungal species on the planet have been formally described and named, and 'dark taxa' - species known only from sequences - represent the vast majority of species within the fungal kingdom. The International Code of Nomenclature requires physical type specimens to officially recognize new fungal species, making it difficult to name dark taxa.
View Article and Find Full Text PDFFor nearly 450 million years, mycorrhizal fungi have constructed networks to collect and trade nutrient resources with plant roots. Owing to their dependence on host-derived carbon, these fungi face conflicting trade-offs in building networks that balance construction costs against geographical coverage and long-distance resource transport to and from roots. How they navigate these design challenges is unclear.
View Article and Find Full Text PDFSuccessful plant growth requires plants to minimize harm from antagonists and maximize benefit from mutualists. However, these outcomes may be difficult to achieve simultaneously, since plant defenses activated in response to antagonists can compromise mutualism function, and plant resources allocated to defense may trade off with resources allocated to managing mutualists. Here, we investigate how antagonist attack affects plant ability to manage mutualists with sanctions, in which a plant rewards cooperative mutualists and/or punishes uncooperative mutualists.
View Article and Find Full Text PDFThe rhizosphere has been called "one of the most complex ecosystems on earth" because it is a hotspot for interactions among millions of microbial cells. Many of these are microbes are also participating in a dynamic interplay with host plant tissues, signaling pathways, and metabolites. Historically, breeders have employed a -centric perspective when trying to harness the potential of microbiome-derived benefits to improve productivity and resilience of economically important plants.
View Article and Find Full Text PDFSocial and political policy, human activities, and environmental change affect the ways in which microbial communities assemble and interact with people. These factors determine how different social groups are exposed to beneficial and/or harmful microorganisms, meaning microbial exposure has an important socioecological justice context. Therefore, greater consideration of microbial exposure and social equity in research, planning, and policy is imperative.
View Article and Find Full Text PDFHumans are inextricably linked to each other and our natural world, and microorganisms lie at the nexus of those interactions. Microorganisms form genetically flexible, taxonomically diverse, and biochemically rich communities, i.e.
View Article and Find Full Text PDFAs an active interface between the host and their diet, the gut microbiota influences host metabolic adaptation; however, the contributions of fungi have been overlooked. Here, we investigate whether variations in gut mycobiome abundance and composition correlate with key features of host metabolism. We obtained animals from four commercial sources in parallel to test if differing starting mycobiomes can shape host adaptation in response to processed diets.
View Article and Find Full Text PDFEmpirical evidence supports selection of soil microbial communities by edaphic properties across large spatial scales; however, less is known at smaller spatial scales. The goal of this research was to evaluate relationships between ecosystem characteristics and bacterial community structure/function at broad taxonomic resolutions in soils across small spatial scales. We employed 16S rRNA gene sequencing, community-level physiological profiling and soil chemical analysis to address this goal.
View Article and Find Full Text PDFElemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of CO treatments (ca.
View Article and Find Full Text PDFAm J Physiol Lung Cell Mol Physiol
October 2020
A rapidly expanding new field of lung research has been produced by the emergence of culture-independent next-generation sequencing technologies. While pulmonary microbiome research lags behind the exploration of the microbiome in other organ systems, the field is maturing and has recently produced multiple exciting discoveries. In this mini-review, we will explore recent advances in our understanding of the lung microbiome and the gut-lung axis from an ecological perspective.
View Article and Find Full Text PDF