Publications by authors named "Heng-Lin Cui"

Seven novel halophilic archaeal strains DYHT-AS-1, GDY60, TS25, XH63, SHR40, SYNS179, and ZY30 were isolated from tidal flat, saline lakes, marine solar saltern and coarse sea salts from different regions of China. Metagenomic and amplicon analyses indicated that the abundance of these seven strains in respective habitats was low. Phylogenetic and comparative genomic analyses indicated that strains DYHT-AS-1, GDY60, TS25, and XH63 formed a tight cluster with Halosimplex species, exhibiting high 16S rRNA gene sequence similarity (90.

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Halophilic aminopeptidases with broad substrate specificity represent valuable biocatalysts for promoting protein hydrolysis in high-salt fermented foods. In this study, an M42 aminopeptidase from the halophilic archaeon, Haladaptatus litoreus, was identified and designated as AP. The optimal reaction conditions for AP were 2-2.

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A new family related to the family Haloarculaceae was proposed and the genus Actinarchaeum was merged into the genus Halocatena through phylogenetic, phylogenomic, and comparative genomic analyses. Four strains KK48, YCN56, SYNS191, and SYNS196 with new taxonomic status were isolated from inland saline lakes and a marine solar saltern. According to the comparison of 16S rRNA gene and rpoB' gene sequences, strains KK48, YCN56, SYNS191, and SYNS196 showed high sequence similarities to the genera Salinibaculum and Salinirubellus, respectively.

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Four halophilic archaeal strains were isolated from sea salt and a saline lake in China. Based on phylogenetic and phylogenomic analyses, the four strains are related to the genera of Halobellus, Halobaculum, and Halorarum within the family Haloferacaceae. The four strains possess genes responsible for carotenoid synthesis, maintenance of a high internal salt concentration, as well as diverse enzymes with biotechnological potential.

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Four novel halophilic archaeal strains CGA53, CG83, FCH27, and SEDH24 were isolated from a soda lake and two saline lakes in China, respectively. Strain CGA53 showed the highest 16S rRNA gene similarity (92.6%) to Salinilacihabitans rarus AD-4, and the other three strains were found to be related to Halalkalicoccus species with similarities of 97.

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Article Synopsis
  • 'Haloarcula aidinensis' was first described by a Chinese scientist and has recently been reclassified based on advanced genomic analyses, linking it to 'Haloarcula amylolytica'.
  • Three new halophilic archaeal strains (CK38, DT43, and SYNS111) were isolated from saline environments in China and classified as new species of Haloarcula.
  • The strains have distinct phenotypic traits and specific phospholipid profiles, leading to the proposal of new species names: Haloarcula sediminis, Haloarcula brevis, and Haloarcula regularis.
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The current representatives of the family Natrialbaceae within the class Halobacteria were subjected to phylogenetic, phylogenomic, and comparative genomic analyses. The current species of Halobiforma and Halomontanus were found to be related to those of Natronobacterium and Natronoglomus, respectively. According to the cutoff value of average amino acid identity (AAI) (≤ 76%) proposed to differentiate genera within the family Natrialbaceae, Halobiforma, and Natronoglomus should be merged with Natronobacterium and Halomontanus, respectively.

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Five halophilic archaeal strains, XH8T, CK5-1T, GDY1T, HW8-1T, and XH21T, were isolated from commercial coarse salt produced in different regions of China. Their 16S rRNA and rpoB' gene sequences indicated that four of the strains (CK5-1T, GDY1T, HW8-1T, and XH21T) represent distinct species within the genus Haloplanus (family Haloferacaceae), while strain XH8T represents a novel genus within the same family. These assignments were supported by phylogenetic and phylogenomic analyses, which showed that strains CK5-1T, GDY1T, HW8-1T, and XH21T cluster with the current species of the genus Haloplanus, while strain XH8T forms a separate branch from the genus Haloplanus.

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Salt-tolerant proteases with remarkable stability are highly desirable biocatalysts in the salt-fermented food industry. In this study, the undigested autocleavage product of HlyA (halolysin A), a low-salt adapted halolysin from halophilic archaeon Halococcus salifodinae, was investigated. HlyA underwent autocleavage of its C-terminal extension (CTE) at temperatures over 40 °C or NaCl concentrations below 2 M to yield HlyAΔCTE.

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Article Synopsis
  • Four new halophilic archaeal strains (YCN1, YCN58, LT38, LT62) were discovered in China’s Yuncheng Salt Lake and Tarim Basin.
  • Phylogenetic analysis showed that these strains are closely related to existing species in the Halobacterium, Natronomonas, Halorientalis, and Halobellus genera, but they meet the criteria for being classified as new species due to distinct characteristics.
  • The newly proposed species are named Halobacterium yunchengense, Natronomonas amylolytica, Halorientalis halophila, and Halobellus salinisoli based on their genetic and phenotypic differences.
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  • Four halophilic archaeal strains (BCD28, BND7, PSR21, and PSRA2) were isolated from different saline soils and showed significant genetic similarities to existing Halomarina species but distinct enough to be considered new species.
  • Genetic analysis indicated that the strains clustered closely with Halomarina but had lower genomic similarity scores, which suggests they are separate species according to classification standards.
  • The study proposes new names for these strains as novel species: Halomarina litorea, Halomarina pelagica, Halomarina halobia, and Halomarina ordinaria, based on their genetic and phenotypic characteristics.
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Article Synopsis
  • * Cutoff values for distinguishing genera in this family were proposed, including AAI (72.1%), ANI (82.2%), and rpoB' gene similarity (90.7%).
  • * Five newly isolated halophilic archaeal strains led to the identification of five new species in the genus Halobaculum, which were named Halobaculum lipolyticum, Halobaculum marinum, Halobaculum litoreum, Halobaculum halobium, and Halobaculum limi
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Haloarchaea with the capacity to degrade alkanes is promising to deal with petroleum pollution in hypersaline environments. However, only a limited number of haloarchaeal species are investigated, and their pathway and mechanism for alkane degradation remain unclear. In this study, Halogranum rubrum RO2-11, a haloarchaeal strain, verified the ability to degrade kerosene and hexadecane in 184 g/L NaCl, with 53% and 52% degradation rates after 9 and 4 days, respectively.

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Histamine, found abundantly in salt-fermented foods, poses a risk of food poisoning. , a halophilic archaeon isolated from a salt lake, displayed a strong histamine degradation ability. Its histamine oxidase (HOD) gene was identified ().

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Article Synopsis
  • The genera Halosegnis and Salella are closely related, with high gene similarity indicating they should be merged into one genus, with Salella cibi as a synonym of Halosegnis longus.
  • Phylogenetic analyses showed that Salella cibi forms a tight cluster with Halosegnis longus, suggesting significant genetic overlap.
  • New species of halophilic archaea were identified from China's saline soil, leading to the proposal of four novel species: Halorussus caseinilyticus, Halorussus lipolyticus, Halosegnis marinus, and Haloglomus litoreum.
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Halophilic archaea of the class are the most salt-requiring prokaryotes within the domain . In 1997, minimal standards for the description of new taxa in the order were proposed. From then on, the taxonomy of the class provides an excellent example of how changing concepts on prokaryote taxonomy and the development of new methods were implemented.

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  • Two halophilic archaea strains, TS33 and KZCA124, were isolated from distinct salt lakes in the Qinghai-Xizang Plateau and are identified as low abundant original inhabitants of those environments.
  • Both strains can grow under extreme conditions, thriving at temperatures between 20-60 °C and varying salinity (0.9-4.8 M NaCl), with respective optimal growth conditions indicated.
  • Genetic analyses suggest that TS33 and KZCA124 are closely related yet distinct enough to potentially classify them as a new species in a new genus within the Natrialbaceae family, as indicated by their unique lipid composition and phenotypic traits.
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  • The genera Haloarcula and Halomicroarcula are closely related within the Haloarculaceae family, showing significant genetic similarities above genus boundaries, suggesting they should be merged.
  • Phylogenomic analysis indicates that Haloarcula and Halomicroarcula form a distinct cluster, differentiated from Halomicrobium, based on various genetic metrics like 16S rRNA and rpoB' gene similarities.
  • Six new species of Haloarcula are described, isolated from salt environments in China, each displaying unique phenotypic traits despite their genetic closeness to existing Haloarcula and Halomicroarcula species.
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  • Two new halophilic archaeal strains, GSLN9 and XZYJT29, were discovered in saline soil from western China, showing significant genetic differences from known species.
  • Genetic analysis revealed their close relations to specific genera, with GSLN9 and XZYJT29 displaying distinct average nucleotide identity and amino acid values compared to their relatives, indicating they do not belong to previously identified species.
  • Phenotypic characterizations and polar lipid compositions further confirmed that GSLN9 and XZYJT29 are unique, leading to the proposal of them as new species, designated as sp. nov. for their respective genera.
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  • Two new strains of halophilic archaea, XZGYJ-43 and ZJ1, were isolated from solar salterns in Tibet and Guangdong, China, respectively.
  • Genetic analysis showed that XZGYJ-43 is quite distinct from related strains, whereas ZJ1 closely clusters with its existing genus.
  • Both strains display unique phenotypic traits and lipid compositions, leading to the proposal of XZGYJ-43 as a new species in a new genus and ZJ1 as a new species in its current genus.
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Two halophilic archaeal strains, ZS-10 and GSL13, were isolated from the Zhoushan marine saltern in Zhejiang, and an inland saline soil from the Tarim Basin, Xinjiang, PR China, respectively. The cells of strain ZS-10 were pleomorphic while those of strain GSL13 were rod-shaped. Both of them stained Gram-negative and formed red-pigmented colonies on agar plates and their cells lysed in distilled water.

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A single extremely halophilic strain was isolated from salt brine produced when a fresh water lake flooded a large salt mine located beneath the lake. The water that entered this mine contained less than 0.34 M NaCl, but over time, this sealed brine became saturated by Cenozoic age salt (121-125 million-year BCE).

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Article Synopsis
  • Five new halophilic archaeal strains were discovered in salt lakes in China, showing low genetic similarities (91.3-96.0%) to existing species and likely representing a new genus.
  • Phylogenetic analysis confirmed these strains form a separate clade, with genetic metrics indicating they don't fit within current species levels, reinforcing their classification as a new genus.
  • The strains exhibit distinct phenotypic traits and contain specific lipids, leading to their identification as five novel species within this proposed new genus.
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