Publications by authors named "Dustin D Smith"

A current challenge in the rational design of biomolecular sensors is the ability to custom design binding affinities and detection mode in silico. To this end, we re-engineered a previously reported computationally-designed fluorescent maltooligosaccharide (MOS)-detecting biosensor to both alter its ligand-binding affinity and to analyse the underlying sensing mechanism. The dynamic range of the biosensor was expanded through the computer aided introduction of a series of amino acid substitutions in the starting protein scaffold (MalX from Streptococcus pneumoniae), which generated a biosensor set with binding affinities spanning over five orders of magnitude.

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Article Synopsis
  • Fluorescent biosensors utilize solute-binding proteins with changes in fluorescence upon ligand binding, useful in various applications.
  • The research presents an enhanced scoring algorithm for the CINC approach, which uses molecular dynamics simulations to design protein-fluorophore conjugates for biosensors.
  • An oligogalacturonide-detecting biosensor was developed to track enzyme activity in real-time during polygalacturonic acid depolymerization, showcasing its potential for broader carbohydrate detection.
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Article Synopsis
  • Scientists have created special proteins that change color when they bind to different substances, and they're used as sensors for various tests.
  • Making these sensors usually involves a lot of trial and error to find the best spots for adding color markers, which can be time-consuming and might mess up how well the sensor works.
  • A new method called CINC helps find the best spots to add these color markers without ruining the sensor, leading to a new, highly effective sensor for detecting a substance called maltooligosaccharides (MOS).
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Introduction: The ability to appropriately seek help is a key skill for medical students transitioning to residency. We designed a simulation activity for senior medical students and became interested in studying help calling behaviors and attitudes.

Methods: We collected quantitative data regarding help calling for 2 simulation cases and qualitative data using a survey.

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Background: Simulation provides a safe learning environment where high-stakes, low-frequency procedures can be practiced without the fear of being unsuccessful or causing harm. Emergency department thoracotomy (EDT) is one such procedure. Realistic thoracotomy models are expensive and not readily available.

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Fluorescently labeled phosphate-binding proteins can be used as biomolecular tools to measure the release of inorganic phosphate (P) from enzymes in real time, enabling the detailed kinetic analysis of dephosphorylating enzymes using rapid-kinetics approaches. Previously reported methods to purify fluorescently labeled phosphate-binding proteins (PhoS) from Escherichia coli are laborious, and a simplified approach is needed. Here, we report the characterization of a cytosol-localized variant (A197C) of PhoS that allows a streamlined purification for subsequent covalent conjugation with a fluorescent dye.

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Background: We hypothesised the addition of brief empathetic statements to physician-patient interaction might decrease thoughts regarding litigation.

Methods: We enrolled a convenience sample of adults in our emergency department (ED) waiting room into a randomised, double-blind controlled trial. Subjects watched videos of simulated discharge conversations between physicians and patient actors; half of the videos differed only by the inclusion of two brief empathetic statements: verbalisations that (1) the physician recognises that the patient is concerned about their symptoms and (2) the patient knows their typical state of health better than a physician seeing them for the first time and did the right thing by seeking evaluation.

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Synthetic biology and the rational design of biological devices depend on the availability of standardized and interchangeable biological parts with diverse range of functions. Reliable access to different reading frames during translation has largely been overlooked as functionality for bioengineering applications. Here we report the construction and initial characterization of the first member of such a class of biological parts that conforms to the BioBrick Standard (RFC25), allowing its interchangeable use in biological devices.

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Objectives: Noninvasive technology may assist the emergency department (ED) physician in determining the hemodynamic status in critically ill patients. The objective of our study was to show that ED physicians can accurately measure cardiac index (CI) by performing a bedside focused cardiac ultrasound examination.

Methods: A convenience sample of adult subjects were prospectively enrolled.

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Spontaneous aortic dissection is a rare, life-threatening cause of chest pain, and has a higher prevalence when traditional risks such as age, hypertension, dyslipidemia, or connective tissue disorders are present. However, even in the absence of risk factors, non-traumatic rupture of an aortic dissection may occur. Most are found in patients over 40 years of age.

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