Publications by authors named "Dhiraj Kumar Chaudhary"

Two yellow-coloured, Gram-stain-positive, oxidase-negative, aerobic, non-motile, and rod-shaped strains, labelled as ProA8 and ProA11, were isolated from digestive tract of red snow crab (). Strain ProA8 grow at temperature range of 15-35°C, while strain ProA11 grow at temperature range of 15-40°C. Phylogenetic and 16S rRNA gene sequence analysis revealed that strains ProA8 and ProA11 belonged to the genera and , respectively.

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During the study of microbial diversity of forest soil in the Republic of Korea, a yellow pigment-producing, Gram-stain-negative, rod-shaped, motile bacterium was isolated and designated as strain 1W2. This strain grew at temperature of 10-37 °C, at pH of 5.0-9.

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An aerobic, Gram-stain-negative, catalase-positive, rod-shaped, and motile bacteria, designated as a strain WR6 was isolated from soil in Republic of Korea. Strain WR6 grew at temperatures of 10-37°C, at pH of 5.0-9.

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Four Gram-stain-positive and two Gram-stain-negative bacterial strains, designated as W4, FW7, TW48, UW52, PT-3, and RJY3, were isolated from soil samples collected from the Republic of Korea. The 16S rRNA gene sequence analysis showed that strains W4 and FW7 belonged to the genus , strains TW48 and UW52 were affiliated to the genus strain PT-3 was related to the genus , and strain RJY3 was associated with the genus . The closest phylogenetic taxa to W4, FW7, TW48, UW52, PT-3, and RJY3 were NEAU-LLE (97.

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A Gram-stain-positive, aerobic, white-coloured, rod-shaped bacteria, designated as a strain dW9, was isolated from soil. Strain dW9 was catalase-positive and oxidase-negative. Strain dW9 grew at temperature of 20-37°C and at pH of 5.

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Three Gram-stain-positive, aerobic, rod-shaped, and non-motile bacteria, labelled as W11, SW19, and YR1, were isolated from soil, and performed their polyphasic taxonomic investigation. The phylogenetic and 16S rRNA gene sequence analysis showed that strains W11, SW19, and YR1 belonged to the genera , , and , respectively. Strain W11 was closely affiliated with SYSU K20354 (98.

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Article Synopsis
  • The study explores the microbial communities in the gastrointestinal (GI) tract of Pacific whiteleg shrimp, focusing on the stomach, hepatopancreas, and intestine, which are essential for immune defense and nutrient absorption.
  • It highlights that while the intestine's microbiome is well-researched, the stomach and hepatopancreas had previously received less attention.
  • Findings showed differing bacterial diversity: the stomach and hepatopancreas had higher levels of Proteobacteria, while the intestine was more diverse with various bacterial types, providing insights that could benefit sustainable aquaculture.
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Two strictly aerobic and rod-shaped bacteria, labelled as DB1703 and DB2414S, were obtained from an automobile air conditioning system. Strain DB1703 was Gram-stain-negative, while strain DB2414S was Gram-stain-positive. Both strains were catalase-positive and oxidase-negative.

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This study investigated the leaching of phthalate and non-phthalate plasticizers from polyvinyl chloride microplastics (MPs) into sediment and their degradation over a 30-d period via abiotic and biotic processes. The results showed that 3579% of plasticizers were released into the sediment from the MPs and > 99.9% degradation was achieved.

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This study investigated the contents of total mercury (THg), trace metals, and CH and determined the signature microbes involved in various biogeochemical processes in the sediment of the Canadian Beaufort Sea. The THg ranged between 32 and 63 μg/kg and the trace metals such as Fe, Al, Mn, and Zn were significant in distributions. The pH, SO, Fe, and redox proxy metals were crucial factors in the spatial and vertical heterogeneity of geochemical distributions.

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An aerobic bacterium, designated as PT-12, was isolated from soil collected from agriculture field, and its taxonomic position was validated through a comprehensive polyphasic methodology. The strain was identified as Gram-stain-negative, non-motile, rod-shaped, and catalase- and oxidase-positive. The yellow-colored colonies showed growth ability at temperature range of 18-37 °C, NaCl content of 0-1.

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During the study of microbial ecology of forest soil, two circular, white-colored bacterial colonies were isolated and labeled as strains TW38 and TW40. Both strains were catalase positive and oxidase negative. Strains TW38 and TW40 demonstrated growth within a temperature range of 10-37 °C and 18-37 °C, respectively, and thrived within a pH range of 5.

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Article Synopsis
  • A bacterial strain named GW78, which is milky-white, aerobic, and Gram-positive, was isolated from forest soil and grows best at 37°C and pH 7.0.
  • The strain has a 16S rRNA gene sequence showing 98.3% similarity to VKPM B-7519, indicating it shares a close relationship with it.
  • Through various analyses, GW78 shows unique genomic and chemotaxonomic properties, leading to its classification as a new species within its genus, named sp. nov., with GW78 designated as the type strain.
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Metal contamination and other geochemical alterations affect microbial composition and functional activities, disturbing natural biogeochemical cycles. Therefore, it is essential to understand the influences of multi-metal and geochemical interactions on microbial communities. This work investigated the distributions of total mercury (THg), methylmercury (MeHg), and trace metals in the anthropogenically affected sediment.

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A white-coloured, rod-shaped, motile, aerobic, and Gram-stain-positive bacterial strain S3N08 was isolated from agricultural soil. The strain grew at temperature 10-40 °C, at 0-1.0% (w/v) NaCl concentration, and at pH 6.

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Volatile organic compounds (VOCs) have been globally reported at various sites. Currently, limited literature is available on VOC bioremediation using bacterial-immobilized biochar (BC-B). In this study, multiple VOC-degrading bacteria were enriched and isolated using a newly designed diffusion bioreactor.

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In this study, total mercury (THg), methylmercury (MeHg), various trace elements, and microbial communities were measured in surface sediments of the East Siberian Sea (ESS). The results showed that the average values of THg and MeHg were 58.8 ± 15.

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S-impregnation of biochar through elemental S streaming is known to increase its sorption performance against Hg and methyl mercury (MeHg). However, the effects of %S-loading on biochar's mechanism and sorption capacities for MeHg, and its consequent impact when used as an amendment material for Hg-contaminated sediments, are poorly understood, and thus, were investigated in this work. Our results showed that a minimum sulfur loading of 1% was the most effective in reducing MeHg levels in sediments.

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This study investigated seasonal trends in bioaccumulation potential and toxic effects of mercury (Hg) in Asian clams (Corbicula fluminea) and microbial community. For this, a clam-exposure experiment was performed during summer, fall, and winter seasons in four different sites (HS1: control/clean site; HS2, HS3, and HS4: contaminated sites) of Hyeongsan River estuary, South Korea. Total mercury (THg) and methylmercury (MeHg) in whole sediments were highest at HS4 site during fall, sustained similar levels during winter, but decreased during summer.

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This study investigated the bacterial community structure and metabolic diversity and their relationship with Hg and other environmental variables in sediments collected from different locations (HSR-1-HSR-6) in the Hyeongsan River estuary in South Korea. The results showed that the highest total mercury (THg) and methylmercury (MeHg) concentrations were in HSR-2, with values of 4585.3 µg/kg and 13.

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A white-colony-forming, facultative anaerobic, motile and Gram-stain-negative bacterium, designated G-1-2-2 was isolated from soil of agriculture field near Kyonggi University, Republic of Korea. Strain G-1-2-2 synthesized the polyhydroxybutyrate and could grow at 10-35 °C. The phylogenetic analysis based on 16S rRNA gene sequence showed that, strain G-1-2-2 formed a lineage within the family Comamonadaceae and clustered as a member of the genus Ramlibacter.

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A yellow-coloured, Gram-stain-positive, motile, aerobic and rod-shaped bacteria, designated DKR-3, was isolated from oil-contaminated experimental soil. Strain DKR-3 could grow at pH 5.0-10.

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A light yellow-coloured, non-motile, aerobic, Gram-stain-negative, and rod-shaped bacterial strain DKR-2 was isolated from oil-contaminated experimental soil. The strain was catalase and oxidase positive, and grew at 0-1.5% (w/v) NaCl concentration, at temperature 10-35 °C, and at pH 6.

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The prominent characteristics of the biochar, high porosity, sorption capacity with low density improve the aeration, making it a desirable amendment material for composting process. The composting efficiency was analysed by the impact of rice husk biochar amendment (0, 2, 4, 6, 8 and 10%) in the presence of salts for the co-composting of food waste and swine manure, in composting reactors for 50 days. Results revealed that biochar amendment had improved the degradation rates by microbial activities in comparison with control.

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Activated carbon (AC) amendment is considered as one of the alternatives for managing and remediating mercury (Hg) contaminated sediments because of its high sorptive capacity and potential to immobilize the contaminant. For this study, the underlying mechanisms that control the reduction of Hg bioavailability in AC-amended estuarine sediments were investigated in box microcosm set-ups with 28-day Asian clam bioassay experiments. The application of diffusive gradients in thin film technique (DGT) revealed that the total mercury and methylmercury levels in sediment pore water decreased by 60%-75% in 1%-3% AC-amended sediments.

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