Plant susceptibility to a shared herbivore is reduced by belowground competition with neighbors.

Spatial variation in plant community composition is an important driver of variation in susceptibility to herbivores. In close proximity, certain neighbors can attract or repel herbivores to a focal plant ("associational effects"). Neighboring plants may also compete for resources, modifying their phenotype in ways that affect susceptibility to herbivores.

Wild and weedy Hesperis matronalis hosts turnip mosaic virus across heterogeneous landscapes in upstate New York.

Turnip mosaic virus (TuMV) is a widespread and economically important pathogen in agricultural crops and has the widest known host range in the virus family Potyviridae. While management of the virus and its aphid vectors in agricultural fields decreases virus incidence, many alternative wild hosts for TuMV may serve as source populations for crop infection through spillover. Over thirty years ago, research demonstrated that the introduced brassica, Dame's Rocket (Hesperis matronalis) hosts several viruses, including TuMV.

Ecology of Yellow Dwarf Viruses in Crops and Grasslands: Interactions in the Context of Climate Change.

Our understanding of the ecological interactions between plant viruses, their insect vectors, and their host plants has increased rapidly over the past decade. The suite of viruses known collectively as the yellow dwarf viruses infect an extensive range of cultivated and noncultivated grasses worldwide and is one of the best-studied plant virus systems. The yellow dwarf viruses are ubiquitous in cereal crops, where they can significantly limit yields, and there is growing recognition that they are also ubiquitous in grassland ecosystems, where they can influence community dynamics.

Farm size affects the use of agroecological practices on organic farms in the United States.

Organic agriculture outperforms conventional agriculture across several sustainability metrics due, in part, to more widespread use of agroecological practices. However, increased entry of large-scale farms into the organic sector has prompted concerns about 'conventionalization' through input substitution, agroecosystem simplification and other changes. We examined this shift in organic agriculture by estimating the use of agroecological practices across farm size and comparing indicators of conventionalization.

Both consumptive and non-consumptive effects of predators impact mosquito populations and have implications for disease transmission.

Predator-prey interactions influence prey traits through both consumptive and non-consumptive effects, and variation in these traits can shape vector-borne disease dynamics. Meta-analysis methods were employed to generate predation effect sizes by different categories of predators and mosquito prey. This analysis showed that multiple families of aquatic predators are effective in consumptively reducing mosquito survival, and that the survival of , , and mosquitoes is negatively impacted by consumptive effects of predators.

Landscape-dependent effects of varietal mixtures on insect pest control and implications for farmer profits.

Intraspecific plant diversity can significantly impact insect herbivore populations in natural systems. Yet, its role as an insect pest control strategy in agriculture has received less attention, and little is known about which crop traits are important to herbivores in different landscape contexts. Moreover, empirical economic analyses on the cost-effectiveness of varietal mixtures are lacking.

Viral infection can reduce the net nitrogen inputs of legume break crops and cover crops.

Legumes are used in crop rotations by both large-scale and smallholder farmers alike to increase soil fertility, especially before high-nitrogen-demanding crops such as corn (maize). Legume crop residues and green manures are rich in nitrogen due to mutualistic rhizobia, bacteria that live in their roots and convert atmospheric nitrogen into a biologically available form. Growers can obtain recommendations from local extension offices about how much less inorganic nitrogen fertilizer needs to be added to a subsequent crop following different legume break crops for the predominant soil type (the nitrogen fertilizer replacement value, or NFRV).

The Role of Vector Trait Variation in Vector-Borne Disease Dynamics.

Many important endemic and emerging diseases are transmitted by vectors that are biting arthropods. The functional traits of vectors can affect pathogen transmission rates directly and also through their effect on vector population dynamics. Increasing empirical evidence shows that vector traits vary significantly across individuals, populations, and environmental conditions, and at time scales relevant to disease transmission dynamics.

Inter- and intraspecific diversity of food legumes among households and communities in Ethiopia.

Smallholders throughout sub-Saharan Africa produce legume crops as sources of food, fodder, and cash income, as well as to improve soil fertility. Ethiopian farmers have developed diverse legume varieties that enable adaptation to changing agroecological and sociocultural conditions. However, over the past several decades, as farm sizes declined and extension services promoted new varieties developed by plant breeders, changes in legume diversity have not been monitored.

Coinfections by noninteracting pathogens are not independent and require new tests of interaction.

If pathogen species, strains, or clones do not interact, intuition suggests the proportion of coinfected hosts should be the product of the individual prevalences. Independence consequently underpins the wide range of methods for detecting pathogen interactions from cross-sectional survey data. However, the very simplest of epidemiological models challenge the underlying assumption of statistical independence.

Modeling Approach Influences Dynamics of a Vector-Borne Pathogen System.

The choice of a modeling approach is a critical decision in the modeling process, as it determines the complexity of the model and the phenomena that the model captures. In this paper, we developed an individual-based model (IBM) and compared it to a previously published ordinary differential equation (ODE) model, both developed to describe the same biological system although with slightly different emphases given the underlying assumptions and processes of each modeling approach. We used both models to examine the effect of insect vector life history and behavior traits on the spread of a vector-borne plant virus, and determine how choice of approach affects the results and their biological interpretation.

Anthropogenic influences on emergence of vector-borne plant viruses: the persistent problem of Potato virus Y.

Potato virus Y (PVY) has reemerged as a serious impediment to seed potato production, responsible for reduced yields and tuber quality, as well as the majority of seed lot rejections by certification programs due to excessive virus incidence. This has led to seed shortages, especially in cultivars highly susceptible to infection. While seed certification programs have been effective at managing many virus diseases below economic thresholds, PVY has rapidly evolved in recent decades to become a complex of strains that evade many certification and farm management practices.

Context-dependent interactions between pathogens and a mutualist affect pathogen fitness and mutualist benefits to hosts.

Plants and animals host many microbial symbionts, including both pathogens and mutualists. However, most experimental studies include only one symbiont, and few examine interactions of more than two microbes with their host. Here, we examined whether coinfection with two pathogens causes a synergistic reduction in the benefits that hosts receive from a microbial mutualist.

Integrating the social, hydrological and ecological dimensions of freshwater health: The Freshwater Health Index.

Degradation of freshwater ecosystems and the services they provide is a primary cause of increasing water insecurity, raising the need for integrated solutions to freshwater management. While methods for characterizing the multi-faceted challenges of managing freshwater ecosystems abound, they tend to emphasize either social or ecological dimensions and fall short of being truly integrative. This paper suggests that management for sustainability of freshwater systems needs to consider the linkages between human water uses, freshwater ecosystems and governance.

Coinfection Timing Drives Host Population Dynamics through Changes in Virulence.

Infections of one host by multiple parasites are common, and several studies have found that the order of parasite invasion can affect both within-host competition and disease severity. However, it is unclear to what extent coinfection timing might be important to consider when modeling parasite impacts on host populations. Using a model system of two viruses infecting barley, we found that simultaneous infections of the two viruses were significantly more damaging to hosts than sequential coinfections.

Vector population growth and condition-dependent movement drive the spread of plant pathogens.

Plant viruses, often spread by arthropod vectors, impact natural and agricultural ecosystems worldwide. Intuitively, the movement behavior and life history of vectors influence pathogen spread, but the relative contribution of each factor has not been examined. Recent research has highlighted the influence of host infection status on vector behavior and life history.

Modeling Virus Coinfection to Inform Management of Maize Lethal Necrosis in Kenya.

Maize lethal necrosis (MLN) has emerged as a serious threat to food security in sub-Saharan Africa. MLN is caused by coinfection with two viruses, Maize chlorotic mottle virus and a potyvirus, often Sugarcane mosaic virus. To better understand the dynamics of MLN and to provide insight into disease management, we modeled the spread of the viruses causing MLN within and between growing seasons.

The community ecology of pathogens: coinfection, coexistence and community composition.

Disease and community ecology share conceptual and theoretical lineages, and there has been a resurgence of interest in strengthening links between these fields. Building on recent syntheses focused on the effects of host community composition on single pathogen systems, we examine pathogen (microparasite) communities using a stochastic metacommunity model as a starting point to bridge community and disease ecology perspectives. Such models incorporate the effects of core community processes, such as ecological drift, selection and dispersal, but have not been extended to incorporate host-pathogen interactions, such as immunosuppression or synergistic mortality, that are central to disease ecology.

Non-random biodiversity loss underlies predictable increases in viral disease prevalence.

Disease dilution (reduced disease prevalence with increasing biodiversity) has been described for many different pathogens. Although the mechanisms causing this phenomenon remain unclear, the disassembly of communities to predictable subsets of species, which can be caused by changing climate, land use or invasive species, underlies one important hypothesis. In this case, infection prevalence could reflect the competence of the remaining hosts.

Richness and composition of niche-assembled viral pathogen communities.

The pathogen and parasite community that inhabits every free-living organism can control host vital rates including lifespan and reproductive output. To date, however, there have been few experiments examining pathogen community assembly replicated at large-enough spatial scales to inform our understanding of pathogen dynamics in natural systems. Pathogen community assembly may be driven by neutral stochastic colonization and extinction events or by niche differentiation that constrains pathogen distributions to particular environmental conditions, hosts, or vectors.

The role of viruses in biological invasions: friend or foe?

Biological invasions occur when plants, animals, or microbes are introduced to a new geographic region, then spread and have negative consequences for the local ecosystem. Across both plant and animal hosts, viruses can play diverse roles in biological invasions. First, viruses can either decrease or increase the impacts of biological invasions by their hosts.

A multi-scale, landscape approach to predicting insect populations in agroecosystems.

Landscape composition affects ecosystems services, including agricultural pest management. However, relationships between land use and agricultural insects are not well understood, and many complexities remain to be explored. Here we examine whether nonagricultural landscapes can directly suppress agricultural pests, how multiple spatial scales of land use concurrently affect insect populations, and the relationships between regional land use and insect populations.

The community ecology of barley/cereal yellow dwarf viruses in Western US grasslands.

Research on plant viruses in natural ecosystems has been increasing rapidly over the past decade. This paper reviews recent research on the barley and cereal yellow dwarf viruses (B/CYDVs) in grasslands of the western US, beginning with the evidence that the disease caused by these viruses facilitated the invasion of western US grasslands by European annual grasses. Observational and experimental studies of B/CYDVs were carried out along a latitudinal gradient (33.

Ecosystem services and agriculture: tradeoffs and synergies.

Agricultural ecosystems provide humans with food, forage, bioenergy and pharmaceuticals and are essential to human wellbeing. These systems rely on ecosystem services provided by natural ecosystems, including pollination, biological pest control, maintenance of soil structure and fertility, nutrient cycling and hydrological services. Preliminary assessments indicate that the value of these ecosystem services to agriculture is enormous and often underappreciated.

Local context drives infection of grasses by vector-borne generalist viruses.

Host characteristics commonly determine infection risk, but infection can also be mediated by regional- or local-scale variation in the biotic and abiotic environment. Experiments can clarify the relative importance of these factors. We quantified drivers of infection by barley and cereal yellow dwarf viruses (B/CYDV), a group of generalist, vector-borne grass pathogens, at hierarchically nested spatial scales (10(5)-1 m) by planting individuals of six common grass species into five Pacific Coast grassland sites spanning 7 degrees of latitude (> 5000 total hosts) and applying a factorial combination of nitrogen and phosphorus fertilizer.