A Methionine-Rich Repeat Forms a Spiral Conformation That Guides Aragonite Nanofiber Organization in Molluscan Ligaments.

Biomacromolecules

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

Published: August 2025


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

The hinge ligament of contains aragonite nanofibers embedded in a dense organic matrix primarily composed of ligament methionine (Met)-rich protein (LMP). LMP features a low-complexity region with 30 repeats of the Met-Met-Met-lysine-proline-aspartic acid (MMMKPD) sequence; however, its structural and functional roles remain unclear. Using synthetic peptides and solution nuclear magnetic resonance with dispersive aragonite particles, we observed that the MMMKPD repeat formed a unique spiral conformation distinct from canonical secondary structures, which was supported by AlphaFold predictions. This structure is stabilized by Met-driven hydrophobic interactions and facilitates the electrostatic alignment of the charged side chains for mineral binding. The spiral structure may represent a previously unrecognized structural motif adapted to mechanically dynamic or high-pressure environments, such as hinge ligaments. Our findings suggest a structural mechanism through which LMP directs aragonite nanofiber formation in molluscan biominerals.

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.biomac.5c00916DOI Listing

Publication Analysis

Top Keywords

spiral conformation
8
aragonite nanofiber
8
methionine-rich repeat
4
repeat forms
4
forms spiral
4
conformation guides
4
aragonite
4
guides aragonite
4
nanofiber organization
4
organization molluscan
4

Similar Publications

A Methionine-Rich Repeat Forms a Spiral Conformation That Guides Aragonite Nanofiber Organization in Molluscan Ligaments.

Biomacromolecules

August 2025

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

The hinge ligament of contains aragonite nanofibers embedded in a dense organic matrix primarily composed of ligament methionine (Met)-rich protein (LMP). LMP features a low-complexity region with 30 repeats of the Met-Met-Met-lysine-proline-aspartic acid (MMMKPD) sequence; however, its structural and functional roles remain unclear. Using synthetic peptides and solution nuclear magnetic resonance with dispersive aragonite particles, we observed that the MMMKPD repeat formed a unique spiral conformation distinct from canonical secondary structures, which was supported by AlphaFold predictions.

View Article and Find Full Text PDF

Structural insights into distinct filamentation states reveal a regulatory mechanism for bacterial STING activation.

mBio

August 2025

Shanxi Key Laboratory for Modernization of Traditional Chinese Veterinary Medicine (TCVM), College of Veterinary Medicine, Shanxi Agricultural University, Jinzhong, China.

The cyclic oligonucleotide-based antiphage signaling system (CBASS) is a bacterial immune mechanism that was evolutionarily linked to the eukaryotic cGAS-STING pathway, which protects against phage infection through abortive cell death. CBASS operons encode cyclic dinucleotide synthases (CD-NTases) and effector proteins (Caps), such as bacterial STING, which senses cyclic dinucleotides like 3'3'-c-di-GMP to trigger defense. Although bacterial STING oligomerizes into filaments upon ligand binding, the functional roles of distinct filament states remain unclear.

View Article and Find Full Text PDF

Replicative helicases are assembled on chromosomes by helicase loaders before the initiation of DNA replication. Here, we investigate the mechanisms employed by the bacterial Vibrio cholerae (Vc) DnaB replicative helicase and the DciA helicase loader. Structural analysis of the ATPγS form of the VcDnaB-ssDNA complex reveals a configuration distinct from that observed with GDP•AlF4.

View Article and Find Full Text PDF

Active spiralling of microtubules driven by kinesin motors.

Sci Rep

July 2025

Applied Physics Course, Faculty of Engineering, Gifu University, 1-1Yanagido, Gifu, 501- 1193, Japan.

Cytoskeletal filaments propelled by surface-bound motor proteins can be viewed as active polymers, a class of active matter. When constraints are imposed on their movements, the propelled cytoskeletal filaments show dynamic patterns distinct from equilibrium conformations. Pinned at their leading ends, propelled microtubules or actin filaments form rotating spirals, whose shape is determined by the interplay between motor forces and the mechanics of the cytoskeletal filaments.

View Article and Find Full Text PDF

Replicative helicases require loader proteins for assembly at the origins of DNA replication. Multiple copies of the bacteriophage λP (P) loader bind to and load the DnaB (B) replicative helicase on replication-origin-derived single-stranded DNA. We find that the DnaB•λP complex exists in two forms: B P and B P .

View Article and Find Full Text PDF