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causes acute and chronic infections, such as those that occur in the lungs of people with cystic fibrosis (CF). In infection environments, oxygen (O) concentrations are often low. The transcription factor Anr (naerobic regulation of arginine deiminase and itrate eduction) responds to low O by upregulating genes necessary for fitness in microoxic and anoxic conditions. Anr regulates Dnr (issimilative itrate respiration egulator), a gene encoding a transcriptional regulator that promotes the expression of genes required for using nitrate as an alternative electron acceptor during denitrification. In CF sputum, transcripts involved in denitrification are highly expressed. While Dnr is necessary for the anoxic growth of in CF sputum and artificial sputum media (ASMi), the contribution of denitrification to fitness in oxic conditions has not been well described. Here, we show that requires for fitness in ASMi, and the requirement for is abolished when nitrate is excluded from the media. Additionally, we show that consumes nitrate in lysogeny broth (LB) under microoxic conditions. Furthermore, strains without a functioning quorum sensing regulator LasR, which leads to elevated Anr activity, consume nitrate in LB even in normoxia. There was no growth advantage for when nitrate was present at concentrations from 100 to 1,600 µM. However, consumption of nitrate in oxic conditions created a requirement for Dnr and Dnr-regulated NorCB, likely due to the need to detoxify nitric oxide. These studies suggest that Anr- and Dnr-regulated processes may impact physiology in many common culture conditions.IMPORTANCE is an opportunistic pathogen commonly isolated from low-oxygen environments such as the lungs of people with cystic fibrosis. While the importance of energy generation by denitrification is clear in anoxic environments, the effects of denitrification in oxic cultures are not well understood. Here, we show that nitrate is consumed in microoxic environments and, in some strains, in normoxic environments. While nitrate does not appear to stimulate microoxic growth rate or yield, it does impact physiology. We show that the regulators Anr (naerobic regulation of arginine deiminase and itrate eduction) and Dnr (issimilative itrate respiration egulator), which are best known for their roles in anoxic conditions, contribute to fitness in common laboratory media in the presence of oxygen.
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http://dx.doi.org/10.1128/spectrum.00682-25 | DOI Listing |
Microorganisms
August 2025
Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, Moscow 119071, Russia.
The bacterial phylum accommodates free-living and symbiotic microorganisms, which inhabit a wide range of environments and specialize in polysaccharide degradation. Due to difficulties in cultivation, much of the currently available knowledge about these bacteria originated from cultivation-independent studies. A phylogenetic clade defined by the free-living bacterium from oilsands tailings pond, , and the symbiont of the tunicate sp.
View Article and Find Full Text PDFBioresour Technol
December 2025
School of Environment and Ecology, Jiangnan University, Wuxi 214122, China; Jiangsu Key Laboratory of Anaerobic Biotechnology, Wuxi 214122, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou 215011, China. Electronic address:
Nitrate and ammonium co-contamination poses a major challenge for sustainable nitrogen removal, especially under microoxic conditions. This study investigated the effect of magnetite on microbial nitrogen metabolism and nitrite accumulation in biocathodes of bioelectrochemical systems under 0.25 mg/L dissolved oxygen.
View Article and Find Full Text PDFMicrobiol Spectr
September 2025
Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA.
causes acute and chronic infections, such as those that occur in the lungs of people with cystic fibrosis (CF). In infection environments, oxygen (O) concentrations are often low. The transcription factor Anr (naerobic regulation of arginine deiminase and itrate eduction) responds to low O by upregulating genes necessary for fitness in microoxic and anoxic conditions.
View Article and Find Full Text PDFEnviron Microbiol Rep
June 2025
Department of Internal Medicine, Division of Infectious Diseases, Rush University Medical Center, Chicago, Illinois, USA.
During the early evolution of life on Earth, the environment was largely free of molecular oxygen, and only anaerobic life existed. With the subsequent oxidation of oceans and the atmosphere, a wide range of environmental niches, ranging from anoxic to microoxic/hypoxic and oxic, developed. Despite this broad range of natural environments, microbiology as a field has focused on the physiology, metabolism, and genetics of aerobic microorganisms, with less attention paid to anaerobes and much less attention paid to microaerophiles.
View Article and Find Full Text PDFEnviron Res
October 2025
Biotechnology Research Laboratory, School of Chemical, Petroleum and Gas Engineering, Iran University of Science and Technology, Tehran, Iran. Electronic address:
The biological S-compounds oxidizing by chemolithoautotrophic sulfur-oxidizing bacteria (SOB) was studied using flux balance analysis. A core stoichiometric model was firstly reconstructed by integrating the versatile energy metabolism of SOB including different S-compounds oxidation as energy sources (E-sources). Energy generation, growth and S-product distribution were then investigated under oxic, anoxic (denitrification) and micro-oxic conditions.
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