Three-Dimensional CH/π and CH/N Interactions from Quantum-Mechanical and Database Analyses.

J Chem Inf Model

Division of Biophysical Chemistry, Department of Pharmaceutical Sciences, Graduate School of Pharmacy, Showa University, 1-5-8, Hatanodai, Shinagawa-ku, Tokyo, 142-8555, Japan.

Published: April 2025


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Article Abstract

Quantum mechanical (QM)-level molecular interaction fields (MIFs) are three-dimensional potential maps that describe the intermolecular interactions surrounding a target molecule, derived through QM calculations. This study employs QM-level MIFs (MIFs(QM)) and analyses of the Cambridge Structural Database (CSD) to uncover the three-dimensional characteristics of CH/π and CH/N interactions in typical nitrogen-containing heterocyclic compounds. Our findings confirm the reliability and applicability of MIF(QM) calculations for analyzing CH/π and CH/N interactions. Additionally, we propose approximation functions of MIFs(QM) and demonstrate that the resulting MIFs(func) are effective for studying CH/π and CH/N interactions in protein/ligand systems.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12042816PMC
http://dx.doi.org/10.1021/acs.jcim.5c00124DOI Listing

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