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For over a century, extrapolation methods have provided a powerful tool to improve the convergence order of a numerical method. However, these tools are not well-suited to modern computer codes, where multiple continua are discretized and convergence orders are not easily analysed. To address this challenge, we present a probabilistic perspective on Richardson extrapolation, a point of view that unifies classical extrapolation methods with modern multi-fidelity modelling, and handles uncertain convergence orders by allowing these to be statistically estimated. The approach is developed using Gaussian processes, leading to . Conditions are established under which extrapolation using the conditional mean achieves a polynomial (or even an exponential) speed-up compared to the original numerical method. Further, the probabilistic formulation unlocks the possibility of experimental design, casting the selection of fidelities as a continuous optimization problem, which can then be (approximately) solved. A case study involving a computational cardiac model demonstrates that practical gains in accuracy can be achieved using the GRE method.
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http://dx.doi.org/10.1093/jrsssb/qkae098 | DOI Listing |
Math Biosci Eng
July 2025
Chair of Data Science, Faculty of Management, Social Work and Construction, HAWK, Haarmannplatz 3, D-37603 Holzminden, Germany.
Mathematical modeling and numerical simulation are valuable tools for getting theoretical insights into dynamic processes such as, for example, within-host virus dynamics or disease transmission between individuals. In this work, we propose a new time discretization, a so-called non-standard finite-difference-method, for numerical simulation of the classical target cell limited dynamical within-host HIV-model. In our case, we use a non-local approximation of our right-hand-side function of our dynamical system.
View Article and Find Full Text PDFAdv Microb Physiol
August 2025
Department of Biological Sciences, University of Texas at Dallas, Richardson, TX, USA.
Paracoccus denitrificans is a long-established model organism for studies of methylotrophy, the use of one-carbon compounds as sources of energy and carbon. P. denitrificans can use methanol and methylamine as growth substrates, oxidizing both to formaldehyde in the periplasm.
View Article and Find Full Text PDFBMJ Open
April 2025
THIS Institute, University of Cambridge, Cambridge, UK.
Objectives: To assess the degree to which we can replicate a study between a regional and a national database of electronic health record data in the UK. The original study examined the risk factors associated with hospitalisation following COVID-19 infection in people with diabetes.
Design: A replication of a retrospective cohort study.
J R Stat Soc Series B Stat Methodol
April 2025
National Heart and Lung Institute, Imperial College London, London, UK.
For over a century, extrapolation methods have provided a powerful tool to improve the convergence order of a numerical method. However, these tools are not well-suited to modern computer codes, where multiple continua are discretized and convergence orders are not easily analysed. To address this challenge, we present a probabilistic perspective on Richardson extrapolation, a point of view that unifies classical extrapolation methods with modern multi-fidelity modelling, and handles uncertain convergence orders by allowing these to be statistically estimated.
View Article and Find Full Text PDFBackground: We describe the epidemiology of asthma, chronic obstructive pulmonary disease (COPD) and interstitial lung disease (ILD) from 2004 to 2023 in England, Wales, Scotland and Northern Ireland (NI) using a harmonised approach.
Methods: Data from the National Health Service England (NHSE), Clinical Practice Research Datalink Aurum in England, Secure Anonymised Information Linkage Databank in Wales, DataLoch in South-East Scotland and the Honest Broker Service in NI were used. A harmonised approach to COPD, asthma and ILD case definitions, study designs and study populations across the four nations was performed.