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We present the genome sequence of strain RCAM05007 obtained from long reads. The strain was isolated from the root nodule of (L.) Taub. plant inoculated with a soil sample from India. The assembly contains one chromosome and two megaplasmids totalling ~6.7 Mbp with 61.6% GC content.
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http://dx.doi.org/10.1128/mra.01012-24 | DOI Listing |
Environ Microbiol Rep
October 2025
Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya, Türkiye.
Boron toxicity and salinity are major abiotic stress factors that cause significant yield losses, particularly in arid and semi-arid regions. Hyperaccumulator plants, such as Puccinella distans (Jacq.) Parl.
View Article and Find Full Text PDFBMC Plant Biol
September 2025
Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena, 83523, Egypt.
Background: Apples are important for human nutrition because these provide vital nutrients, including vitamins and minerals, that are needed for a balanced diet. A suitable environment for the growth and survival of various microorganisms is also provided by multiple nutrients, such as carbohydrates, minerals, vitamins, and amino acids. Penicillium spp.
View Article and Find Full Text PDFMicrob Drug Resist
September 2025
Infectious Diseases and Tropical Medicine Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, I.R. Iran.
Fluoroquinolone resistance in , particularly uropathogenic (UPEC), is a growing concern worldwide. This study investigates the association between mutations in the and genes and fluoroquinolone resistance in UPEC isolates from Urine samples in Iran. In total, 150 UPEC isolates were collected, and then, 12 ciprofloxacin-resistant isolates were selected for molecular analysis.
View Article and Find Full Text PDFGenomics
September 2025
Laboratory of Single Cell Analyses, Institute of Bioorganic Chemistry Polish Academy of Sciences, Zygmunta Noskowskiego str. 12/14, 61-704 Poznań, Poland. Electronic address:
Despite advancements in genome annotation tools, challenges persist for non-classical model organisms with limited genomic resources, such as Schmidtea mediterranea. To address these challenges, we developed a flexible and scalable genome annotation pipeline that integrates short-read (Illumina) and long-read (PacBio) sequencing technologies. The pipeline combines reference-based and de novo assembly methods, effectively handling genomic variability and alternative splicing events.
View Article and Find Full Text PDFFish Shellfish Immunol
September 2025
College of Marine Science and Fisheries, Jiangsu Ocean University, Lianyungang, Jiangsu 222005, China; Jiangsu Key Laboratory of Marine Genetic Resources and Breeding, Jiangsu Ocean University, Jiangsu 222005, China; Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyunga
Turbot (Scophthalmus maximus) is one of the most widely species that boasts high economic value in the aquaculture industry. In spite of the exponential growth of aquaculture, infectious bacterial diseases have caused great economic losses in turbot industry. This study isolated and identified a strain of Pseudomonas putida, denoted as DY16, and it is a conditionally pathogenic bacterium, therefore we conducted the following research on it.
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