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A computational workflow is proposed to quantify and rationalize the relative stability of different structures of molecular crystals using cluster models and quantum chemical methods. The Hartree-Fock plus London Dispersion (HFLD) scheme is used to estimate the lattice energy of molecular crystals in various structural arrangements. The fragment-pairwise Local Energy Decomposition (fp-LED) scheme is then employed to quantify the key intermolecular interactions responsible for the relative stability of different crystal structures. The fp-LED scheme provides also in-depth chemical insights by decomposing each interaction into energy components such as dispersion, electrostatics, and exchange. Notably, this analysis requires only a single interaction energy computation per structure on a suitable cluster model. As a case study, two polymorphs of each of the following are considered: naphthyl-substituted dipnictanes (with As, Sb, and Bi as the pnictogen atom) and tris(thiophen-2-yl)bismuthane. The approach outlined offers high accuracy as well as valuable insights for developing design principles to engineer crystal structures with tailored properties, opening up new avenues in the study of molecular aggregates, potentially impacting diverse fields in materials science and beyond.
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http://dx.doi.org/10.1039/d4cp03697b | DOI Listing |
RSC Med Chem
August 2025
School of Cellular and Molecular Medicine, University of Bristol Bristol BS8 1TD UK
Carbapenemases, β-lactamases hydrolysing carbapenem antibiotics, challenge the treatment of multi-drug resistant bacteria. The OXA-48 carbapenemase is widely disseminated in , necessitating new treatments for producer strains. Diazabicyclooctane (DBO) inhibitors, including avibactam and nacubactam, act on a wide range of enzymes to overcome β-lactamase-mediated resistance.
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September 2025
Department of Chemistry, Central University of Karnataka Kalaburagi-585 367 Karnataka India.
This research work details the use of a molecular hybridization technique to create a library of four series of hydrazineyl-linked imidazo[1,2-]pyrimidine-thiazole derivatives. The structure of one of the final products, K2, was validated using single-crystal X-ray diffraction. Twenty-six novel hybrid molecules (K1-K26) were synthesized and tested for activity against the H37Rv strain.
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July 2025
Institute for Pharmaceutical Chemistry, Johann Wolfgang Goethe-University Max-von-Laue-Str. 9 D-60438 Frankfurt am Main Germany
Herein we present the rapid development of LH168, a potent and highly selective chemical probe for WDR5, streamlined by utilizing a DEL-ML (DNA encoded library-machine learning) hit as the chemical starting point. LH168 was comprehensively characterized in bioassays and demonstrated potent target engagement at the WIN-site pocket of WDR5, with an EC of approximately 10 nM, a long residence time, and exceptional proteome-wide selectivity for WDR5. In addition, we present the X-ray co-crystal structure and provide insights into the structure-activity relationships (SAR).
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August 2025
Engineering Research Center of Cell & Therapeutic Antibody (MOE), School of Pharmacy, Shanghai Jiao Tong University Shanghai 200240 China
Predicting Antibody-Antigen (Ab-Ag) docking and structure-based design represent significant long-term and therapeutically important challenges in computational biology. We present SAGERank, a general, configurable deep learning framework for antibody design using Graph Sample and Aggregate Networks. SAGERank successfully predicted the majority of epitopes in a cancer target dataset.
View Article and Find Full Text PDFChem Commun (Camb)
September 2025
State Key Laboratory of Catalysis, Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
Visible-light-responsive Rh/Sb co-doped SrTiO with engineered {100}/{110} facets (STO:RS(NaCl)) was synthesized flux-assisted crystallization. Facet-dependent spatial charge separation, driven by work function differences, enabled electrons and holes to migrate to the respective facets. This configuration tripled photocatalytic hydrogen evolution non-faceted STO:RS(w/o), overcoming the limitations of ultraviolet-only absorption and inefficient charge separation.
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