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The genotype evaluation process requires analysis of GxE interactions to ascertain the responsiveness of a genotype to various environments, including the development of early maturing rice. However, the concept of interaction is relatively specific to grain yield. In contrast, grain yield is highly polygenic, so assessment should be carried out with multivariate approaches. Therefore, multivariate assessment in evaluating GxE interactions should be developed, especially for early maturing rice genotypes. The study aimed to develop a comprehensive multivariate approach to improve the comprehensiveness and responsiveness of GxE interaction analysis. The study was conducted in Bone and Soppeng districts, South Sulawesi, Indonesia, in two seasons. The study used a randomized complete block design, where replications were nested across two seasons and locations. Two check varieties and five early maturing varieties were replicated three times in each environment. Based on this study, a new approach to GxE interaction analysis based on multiple regression index analysis, BLUP analysis, factor analysis, and path analysis was considered adequate, especially for evaluating early maturing rice. This approach combined days to harvest, biological yield, and grain yield in multiple linear regression with weighting based on the combination of all analyses. The effectiveness of the GxE interaction assessment was reflected by high coefficient of determination (R) and gradient (b) values above 0.8 and 0.9, respectively. Inpari 13 (R0.9; b=1.05), Cakrabuana (R0.98; b=0.99), and Padjajaran (R0.95; b=1.07) also have good grain yield with days to harvesting consideration, namely 7.83 ton ha, 98.12 days; 7.37 ton ha, 95.52 days; and 7.29 ton ha, 97.23 days, respectively. Therefore, this index approach can be recommended in GxE interaction analysis to evaluate early maturing rice genotypes. Furthermore, Inpari 13, Cakrabuana, and Padjajaran are recommended as adaptive early maturing varieties.
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http://dx.doi.org/10.3389/fpls.2024.1462981 | DOI Listing |
Infect Immun
September 2025
Institute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University, Düsseldorf, Germany.
Lymphotoxin β receptor (LTβR/TNFRSF3) signaling plays a crucial role in immune defense. Notably, LTβR-deficient (LTβR) mice exhibit severe defects in innate and adaptive immunity against various pathogens and succumb to infection. Here, we investigated the bone marrow (BM) and peritoneal cavity (PerC) compartments of LTβR mice during infection, demonstrating perturbed B-cell and T-cell subpopulations in the absence of LTβR signaling.
View Article and Find Full Text PDFJ Anim Sci
September 2025
Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic.
Metabolic stress and negative energy balance (NEB) are typical undesirable accompanying phenomenon of the post-partum period in dairy cattle. They negatively affect not only milk production but also the reproductive abilities of the cow, and it is therefore desirable to recognize NEB early to prevent its development. Metabolic stress markers are traditionally total cholesterol (tChol), non-esterified fatty acids (NEFA), beta-hydroxybutyrate (BHB) and triacylglycerols (TAGs).
View Article and Find Full Text PDFNAR Mol Med
July 2025
Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada.
Advanced maternal age increases the risk of pregnancy complications due, in part, to changes in the uterine environment. Here, we show that uterine aging in mice is associated with a progressive increase in transcriptional variation, accompanied by a notable accumulation of activating histone marks at multiple genomic loci. Importantly, the transcriptional signatures of uterine aging differ substantially from senescence markers associated with organismal aging.
View Article and Find Full Text PDFFASEB J
September 2025
Faculty of Medicine in Pilsen, Biomedical Center, Charles University, Prague, Czech Republic.
Mitochondria in the egg are suggested to be crucial for the onset of new life. However, there is ambiguous knowledge about the necessity for fertilization and early embryonic development. Therefore, we created a conditional Tfam knockout (Tfam; Zp3-Cre) to produce Tfam oocytes for investigation of the mitochondrial abundance in oocytes and early embryos.
View Article and Find Full Text PDFActa Paediatr
September 2025
Department of Pediatrics II (Neonatology), Medical University of Innsbruck, Innsbruck, Austria.
Aim: To evaluate the relationship between amplitude-integrated electroencephalography (aEEG), general movement assessment (GMA) and later motor outcome in preterm infants.
Methods: This retrospective study analysed data from 274 very preterm infants born at Innsbruck Medical University Hospital. aEEG was performed within 72 h of birth and weekly for the first month.