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The existence of multiple biomolecular condensates inside living cells is a peculiar phenomenon not compatible with the predictions of equilibrium statistical mechanics. In this work, we address the problem of multiple condensates state (MCS) from a functional perspective. We combine Langevin dynamics, reaction-diffusion simulation, and dynamical systems theory to demonstrate that MCS can indeed be a function optimization strategy. Using Arp2/3 mediated actin nucleation pathway as an example, we show that actin polymerization is maximum at an optimal number of condensates. For a fixed amount of Arp2/3, MCS produces a greater response compared to its single condensate counterpart. Our analysis reveals the functional significance of the condensate size distribution which can be mapped to the recent experimental findings. Given the spatial heterogeneity within condensates and non-linear nature of intracellular networks, we envision MCS to be a generic functional solution, so that structures of network motifs may have evolved to accommodate such configurations.
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http://dx.doi.org/10.1038/s41467-024-50489-5 | DOI Listing |
Nat Commun
July 2024
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138, USA.
The existence of multiple biomolecular condensates inside living cells is a peculiar phenomenon not compatible with the predictions of equilibrium statistical mechanics. In this work, we address the problem of multiple condensates state (MCS) from a functional perspective. We combine Langevin dynamics, reaction-diffusion simulation, and dynamical systems theory to demonstrate that MCS can indeed be a function optimization strategy.
View Article and Find Full Text PDFbioRxiv
May 2024
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
The existence of multiple biomolecular condensates inside living cells is a peculiar phenomenon not compatible with the predictions of equilibrium statistical mechanics. In this work, we address the problem of multiple condensates state (MCS) from a functional perspective. We combined Langevin dynamics, reaction-diffusion simulation, and dynamical systems theory to demonstrate that MCS can indeed be a function optimization strategy.
View Article and Find Full Text PDFMethods Enzymol
June 2021
Department of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University, School of Medicine, Baltimore, MD, United States.
Biomolecular condensates (BCs) are intracellular condensates that form by phase separation of proteins and RNA from the nucleoplasm or cytoplasm. BCs often form complex assemblies where compositionally distinct condensates wet each other without mixing. In this chapter, we describe methods to reconstitute multi-condensate assemblies from purified components.
View Article and Find Full Text PDFJ Phys Condens Matter
August 2020
Departamento de Física, Universidade Federal de Pernambuco, Av. Prof. Aníbal Fernandes, s/n, 50740-560, Recife-PE, Brazil.
There is a tacit assumption that multiband superconductors are essentially the same as multigap superconductors. More precisely, it is usually assumed that the number of excitation gaps in the single-particle energy spectrum of a uniform superconductor (i.e.
View Article and Find Full Text PDF