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Premise: To improve forest conservation monitoring, we developed a protocol to automatically count and identify the seeds of plant species with minimal resource requirements, making the process more efficient and less dependent on human operators.
Methods And Results: Seeds from six North American conifer tree species were separated from leaf litter and imaged on a flatbed scanner. In the most successful species-classification approach, an ImageJ macro automatically extracted measurements for random forest classification in the software R. The method allows for good classification accuracy, and the same process can be used to train the model on other species.
Conclusions: This protocol is an adaptable tool for efficient and consistent identification of seed species or potentially other objects. Automated seed classification is efficient and inexpensive, making it a practical solution that enhances the feasibility of large-scale monitoring projects in conservation biology.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11192156 | PMC |
http://dx.doi.org/10.1002/aps3.11596 | DOI Listing |
Microb Biotechnol
September 2025
Departamento de Biología Funcional, Universidad de Santiago de Compostela, Santiago de Compostela, Spain.
The seed microbiota, a still underexplored component of plant-microbe interactions, plays a pivotal role in plant development and holds significant promise for advancing sustainable agriculture. By influencing essential processes such as germination, stress tolerance, nutrient acquisition and defence, seed-associated microbes offer unique advantages beyond those of soil- or rhizosphere-associated microbiomes. Notably, they are transmitted both vertically and horizontally; however, fundamental questions remain regarding their origin, ecological dynamics and functional roles across environments.
View Article and Find Full Text PDFBiol Lett
September 2025
Department of Vertebrate Zoology, Division of Mammals, Smithsonian National Museum of Natural History, Washington, DC, USA.
Accurately identifying evolutionarily significant units (ESUs) is crucial for conservation planning, especially for species like pangolins threatened by overhunting and habitat loss. ESUs help categorize different pangolin populations, aiding in understanding their genetic diversity and distribution, which is vital for targeted conservation efforts. This research generated mitochondrial genomes from historical museum specimens of Sunda pangolins () from underrepresented locations, uncovering a new evolutionary lineage from the Mentawai Islands that diverged from Indochina and west Sundaland populations around 760 000 years ago.
View Article and Find Full Text PDFPlant J
September 2025
State Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden, Chinese Academy of Science, Wuhan, Hubei, 430074, China.
Trapa L. is a non-cereal aquatic crop with significant economic and ecological value. However, debates over its classification have caused uncertainties in species differentiation and the mechanisms of polyploid speciation.
View Article and Find Full Text PDFAnn Bot
September 2025
Royal Botanic Gardens, Kew, Richmond, Research department, Surrey, TW9 3AE, UK.
Background And Aims: Crop wild relatives (CWRs) are key resources for enhancing agricultural resilience, providing genetic traits that can improve pest resistance, abiotic stress tolerance, and nutritional composition in domesticated crops. Within the mustard family (Brassicaceae) this is especially significant in the Brassiceae tribe, which includes economically important genera for agriculture such as Brassica and Sinapis. However, while breeding programmes have historically focused on major crops within this tribe, the potential of their wild relatives, particularly for underutilised and minor crops, remains insufficiently explored.
View Article and Find Full Text PDFJ Food Sci
September 2025
Faculty of Computing, Federal University of Uberlandia, Uberlândia, Brazil.
The coffee roasting process is a critical factor in determining the final quality of the beverage, influencing its flavour, aroma, and acidity. Traditionally, roast-level classification has relied on manual inspection, which is time-consuming, subjective, and prone to inconsistencies. However, advancements in machine learning (ML) and computer vision, particularly convolutional neural networks (CNNs), have shown great promise in automating and improving the accuracy of this process.
View Article and Find Full Text PDF