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Protein folding as a jamming transition. | LitMetric

Protein folding as a jamming transition.

ArXiv

Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut, 06520, USA.

Published: May 2024


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Article Abstract

Proteins fold to a specific functional conformation with a densely packed hydrophobic core that controls their stability. We develop a geometric, yet all-atom model for proteins that explains the universal core packing fraction of found in experimental measurements. We show that as the hydrophobic interactions increase relative to the temperature, a novel jamming transition occurs when the core packing fraction exceeds . The model also recapitulates the global structure of proteins since it can accurately refold to native-like structures from partially unfolded states.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11118678PMC

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