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Bimolecular substitution reactions involving N as the central atom have continuously improved our understanding of substitution dynamics. This work used chemical dynamics simulations to investigate the dynamics of NHCl with N as the central atom and the multiatomic nucleophile CHO and compared these results with the F + NHCl reaction. The most noteworthy difference is in the competition between proton transfer (PT) and the S2 pathways. Our results demonstrate that, for the CHO + NHCl system, the PT pathway is considerably more favorable than the S2 pathway. In contrast, no PT pathway was observed for the F + NHCl system at room temperature. This can be attributed to the exothermic reaction of the PT pathway for the CHO + NHCl reaction and is coupled with a more stable transition state compared to the substitution pathway. Furthermore, the bulky nature of the CHO group impedes its participation in S2 reactions, which enhances both the thermodynamic and the dynamic advantages of the PT reaction. Interestingly, the atomic mechanism reveals that the PT pathway is primarily governed by indirect mechanisms, similar to the S2 pathway, with trajectories commonly trapped in the entrance channel being a prominent feature. These trajectories are often accompanied by prolonged and frequent proton exchange or proton abstraction processes. This current work provides insights into the dynamics of N-centered PT reactions, which are useful in gaining a comprehensive understanding of the dynamics behavior of similar reactions.
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http://dx.doi.org/10.1021/acs.jpca.3c08447 | DOI Listing |
Soft Matter
July 2025
School of Chemistry, University of Hyderabad, Hyderabad-500046, India.
L-Alaninol and its derivatives display interesting biological and pharmacological properties, suggesting potential use in biomedical applications. Here we present the synthesis and characterization of -acyl-L-alaninols (OAAOHs) bearing long, saturated acyl chains ( = 14-20). Our study focuses on examining their thermotropic phase behavior, supramolecular organization, and interaction with sodium dodecyl sulfate (SDS), with the objective of preparing novel catanionic liposomes.
View Article and Find Full Text PDFActa Crystallogr E Crystallogr Commun
May 2025
Chemistry Department, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland.
The title centrosymmetric tetra-nuclear cadmium(II) com-plex of 4-amino-anti-pyrine and chloride ions, [CdCl(CHNO)]·1.7HO, was synthesized using methanol as solvent. The two independent Cd ions in the asymmetric unit have different geometries; the outer Cd atoms have fivefold CdONCl coordination spheres, while the inner Cd atoms have sixfold CdONCl coordination spheres.
View Article and Find Full Text PDFOrg Biomol Chem
June 2025
School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
A detailed solvatomorphism study conducted on a diamine-terminated 2,6-pyridyldicarboxamide-based foldamer 1 is reported. This investigation establishes the influence of a diverse range of polar and non-polar solvents including chloroform (1A), a trifluorotoluene/dichloromethane mixture (1A), dimethylformamide/diethyl ether (1B), tetrahydrofuran (1·THF), butanone (1·butanone), dichloromethane (1·DCM), a methanol/dichloromethane mixture (1·MeOH) and dimethylsulfoxide (1·DMSO) on the solid-state conformation and crystal packing behaviour of this supramolecular scaffold. Single-crystal X-ray diffraction analysis of the seven solvatomorphs of the studied foldamer (1A, 1B, 1·DCM, 1·THF, 1·butanone, 1·MeOH and 1·DMSO) identified that 1·DCM, 1·THF, 1·butanone, 1·MeOH and 1·DMSO form supramolecular aggregates (, channels/cavities) which incorporate solvent molecules within the voids of the system, leading them to adopt channels of differing dimensions between 3.
View Article and Find Full Text PDFThe title compound, CHClNO, is significantly distorted from planarity, with a twist angle between the planes through the hy-droxy-benzene and acetamide groups being 23.5 (2)°. This conformation is supported by intra-molecular C-H⋯O and N-H⋯Cl contacts.
View Article and Find Full Text PDFChemphyschem
November 2024
National Insitute of Science Education and Research (NISER) Bhubaneswar, An OCC of Homi Bhabha National Institute, P. O. Jatni, Khurdha, Odisha, 752050, India.
The atomic-level mechanisms of the nucleophilic substitution reactions at the nitrogen center (S2@N) were investigated for the reactions of chloramine (NHCl) with the alkoxide ions (RO, where R=H, CH, and CH) using DFT and MP2 methods. The computed potential energy profiles for the S2@N pathways involving the back-side attack of the nucleophiles show the typical double-well potential with submerged barriers similar to the S2 reactions at the carbon center (S2@C). However, the pre-reaction and post-reaction complexes are, respectively, the N-H⋅⋅⋅O and N-H⋅⋅⋅Cl hydrogen-bonded intermediates, which are different from those generally seen in S2@C reactions.
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