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In order to assess the fate and persistence of volatile organic compounds (VOCs) in the atmosphere, it is necessary to determine their oxidation rate constants for their reaction with ozone (). However, given that experimental values of are only available for a few hundred compounds and their determination is expensive and time-consuming, developing predictive models for is of great importance. Thus, this study aimed to develop reliable quantitative structure-activity relationship (QSAR) models for 302 values of 149 VOCs across a broad temperature range (178-409 K). The model was constructed based on the combination of a simplified molecular-input line-entry system (SMILES) and temperature as an experimental condition, namely quasi-SMILES. In this study, temperature was incorporated in the models as an independent feature. The hybrid optimal descriptor generated from the combination of quasi-SMILES and HFG (hydrogen-filled graph) was used to develop reliable, accurate, and predictive QSAR models employing the CORAL software. The balance between the correlation method and four different target functions (target function without considering IIC or CII, target function using each IIC or CII, and target function based on the combination of IIC and CII) was used to improve the predictability of the QSAR models. The performance of the developed models based on different target functions was compared. The correlation intensity index (CII) significantly enhanced the predictability of the model. The best model was selected based on the numerical value of of the calibration set (split #1, = 0.9834, = 0.9276, = 0.9136, and calibration = 0.8770). The promoters of increase/decrease for log were also computed based on the best model. The presence of a double bond (BOND10000000 and $10 000 000 000), absence of halogen (HALO00000000), and the nearest neighbor codes for carbon equal to 321 (NNC-C⋯321) are some significant promoters of endpoint increase.
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http://dx.doi.org/10.1039/d3ra08805g | DOI Listing |
SAR QSAR Environ Res
August 2025
Structural Biology and Biocomputing Lab, Department of Bioinformatics, Alagappa University, Karaikudi, India.
, a causative agent of lymphatic filariasis, relies on its endosymbiont for survival. MurE ligase, a key enzyme in peptidoglycan biosynthesis, serves as a promising drug target for anti-filarial therapy. In this study, we employed a hierarchical virtual screening pipeline to identify phytochemical inhibitors targeting the MurE enzyme of the endosymbiont of (MurE).
View Article and Find Full Text PDFSAR QSAR Environ Res
August 2025
Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China (UESTC), Chengdu, China.
Peptide quantitative structure-activity relationship (pQSAR) has been widely used in the computational peptidology community to model, predict and explain the activity and function of bioactive peptides. Various amino acid descriptors (AADs) have been developed to characterize the residue building blocks of peptides at sequence level. However, a significant issue is that the total number of AAD-characterized descriptors is proportional to peptide length, thus causing inconsistency in the resulting descriptor vector matrix for a panel of length-varying peptide sequences (LVPSs), which cannot be engaged in pQSAR modelling.
View Article and Find Full Text PDFChem Res Toxicol
September 2025
C.F.E.B Sisley Paris, 32 Avenue des Béthunes, 95310 Saint Ouen L'Aumône, France.
The development of alternative methods to animal testing has gained momentum over the years, including the rapid growth of methods, which are faster and more cost-effective. A large number of tools have been published, focusing on Read-Across, (quantitative) Structure-Activity Relationship ((Q)SAR) models, and Physiologically Based Pharmacokinetic (PBPK) models. All of these methods play a crucial role in the risk assessment for cosmetics.
View Article and Find Full Text PDFACS Chem Neurosci
September 2025
Department of Medical Biology, Faculty of Medicine, Bahçeşehir University, Istanbul 34353, Turkey.
IL-17A is a pro-inflammatory cytokine that significantly contributes to the pathogenesis of autoimmune diseases, including multiple sclerosis (MS). Previous studies have suggested that PARP-1 inhibitors can modulate IL-17A-mediated inflammation, prompting the investigation of Niraparib, an FDA-approved PARP-1 inhibitor, as a potential therapeutic agent for MS. In this study, we hypothesized that Niraparib could disrupt the interaction between IL-17A and its receptor, IL-17RA.
View Article and Find Full Text PDFEnviron Res
September 2025
School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, Hubei, 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycling, 1037 Luoyu Road, Wuhan, Hubei, 430074, China. Electronic address: ho
The activation of peroxymonosulfate (PMS) by biochar has shown promising potential for the efficient degradation and detoxification of antibiotics in wastewater. However, the underlying mechanisms are not fully understood. In this study, Fenton-conditioned sludge-derived biochar (FSBC) was prepared by microwave pyrolysis to activate PMS for the efficient degradation and detoxification of sulfamethoxazole (SMX).
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