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The observation of post-transition-state dynamic effects in the context of metal-based transformation is rare. To date, there has been no reported case of a dynamic effect for the widely employed class of palladium-mediated coupling reactions. We performed an experimental and computational study of the trifluoromethylation of PdF, which is a key step in the Pd/Pd-catalyzed trifluoromethylation of aryl halides or acid fluorides. Our experiments show that the / speciation of the formed PdCF is highly solvent- and transmetalation reagent-dependent. We employed GFN2-xTB- and B3LYP-D3-based molecular dynamics trajectory calculations (with and without explicit solvation) along with high-level QM calculations and found that depending on the medium, different transmetalation mechanisms appear to be operative. A statistically representative number of Born-Oppenheimer molecular dynamics (MD) simulations suggest that in benzene, a difluorocarbene is generated in the transmetalation with RSiCF, which subsequently recombines with the Pd via two distinct pathways, leading to either the - or PdCF. Conversely, GFN2-xTB simulations in MeCN suggest that in polar/coordinating solvents an ion-pair mechanism is dominant. A CF anion is initially liberated and then rebinds with the Pd cation to give a - or Pd. In both scenarios, a single transmetalation transition state gives rise to both - and -species directly, owing to bifurcation after the transition state. The potential subsequent - to isomerization of the PdCF was also studied and found to be strongly inhibited by free phosphine, which in turn was experimentally identified to be liberated through displacement by a polar/coordinating solvent from the -PdCF complex. The simulations also revealed how the variation of the Pd-coordination sphere results in divergent product selectivities.
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http://dx.doi.org/10.1021/jacsau.3c00724 | DOI Listing |
Phys Chem Chem Phys
June 2025
School of Chemical Sciences, National Institute of Science Education and Research (NISER) Bhubaneswar, An OCC of Homi Bhabha National Institute, Khurda, Odisha, 752050, India.
The mechanism of 1-pyrazoline denitrogenation has garnered significant attention due to its remarkable stereoselectivity. In this study, the thermal denitrogenation mechanism of 1-pyrazoline was investigated using classical trajectory simulations to elucidate post-transition state and post-second-order saddle dynamics. Trajectories initiated from the synchronous transition state region predominantly followed the minimum energy pathway, forming the trimethylene diradical intermediate, which subsequently yielded cyclopropane with a preference for single inversion of the configuration.
View Article and Find Full Text PDFPhys Chem Chem Phys
April 2025
School of Chemical Sciences, National Institute of Science Education and Research (NISER) Bhubaneswar, An OCC of Homi Bhabha National Institute, Khurda, Odisha 752050, India.
In gas phase experiments [H. Chen, R. G.
View Article and Find Full Text PDFJ Am Chem Soc
February 2025
Department of Chemistry, University of California-Davis, Davis, California 95616, United States.
A post-transition state surface intersection (PTSSI) between radical and zwitterionic states that causes a bifurcation in the reaction pathway was discovered through density functional theory calculations on potential energy surfaces and ab initio molecular dynamics simulations of cycloadditions between a bicyclobutane and a triazolinedione (BCB-TAD). It was predicted that changes to the solvent polarity would enable control over the dynamic selectivity in this system; indeed, experimental evidence supported this prediction. This work not only provides new insights into an unusual type of post-transition state bifurcation, but also demonstrates how the nonstatistical dynamic effects that control selectivity for such reactions can be manipulated rationally to increase the yields of synthetically useful reactions.
View Article and Find Full Text PDFMolecules
November 2024
Henan-Macquarie University Joint Centre for Biomedical Innovation, Henan Key Laboratory of Brain Targeted Bio-Nanomedicine, School of Life Sciences, Henan University, Kaifeng 475004, China.
Post-transition state bifurcation (PTSB) is a fundamental process in which a single transition state leads to multiple products. This phenomenon is important in both biological and chemical contexts and offers valuable insights into reaction mechanisms and their applications. The theozyme model, which focuses on key residues within enzymes, offers a computationally efficient method for studying these processes while preserving the enzyme's catalytic properties.
View Article and Find Full Text PDFJ Org Chem
December 2024
Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States.
The mechanism of the dirhodium-catalyzed combined C-H functionalization/Cope rearrangement (CH/Cope) reaction discovered by the Davies group has been investigated with density functional theory (DFT) calculations and quasi-classical molecular dynamics (MD) simulations. Computations from the Davies group previously showed that there is a post-transition state bifurcation leading to a direct CH reaction and also to the CH/Cope product. While this work was in preparation, the Tantillo group and the Ess group independently reported quantum mechanical and molecular dynamics studies on the dirhodium-tetracarboxylate-catalyzed diazoester CH/Cope and CH insertion reactions with 1,3-cyclohexadiene and 1,4-cyclohexadiene, respectively.
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