Modulation of protein-saccharide interactions by deep-sea osmolytes under high pressure stress.

Int J Biol Macromol

Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany. Electronic address:

Published: January 2024


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Deep-sea organisms must cope with high hydrostatic pressures (HHP) up to the kbar regime to control their biomolecular processes. To alleviate the adverse effects of HHP on protein stability most organisms use high amounts of osmolytes. Little is known about the effects of these high concentrations on ligand binding. We studied the effect of the deep-sea osmolytes trimethylamine-N-oxide, glycine, and glycine betaine on the binding between lysozyme and the tri-saccharide NAG3, employing experimental and theoretical tools to reveal the combined effect of osmolytes and HHP on the conformational dynamics, hydration changes, and thermodynamics of the binding process. Due to their different chemical makeup, these cosolutes modulate the protein-sugar interaction in different ways, leading to significant changes in the binding constant and its pressure dependence. These findings suggest that deep-sea organisms may down- and up-regulate reactions in response to HHP stress by altering the concentration and type of the intracellular osmolyte.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijbiomac.2023.128119DOI Listing

Publication Analysis

Top Keywords

deep-sea osmolytes
8
deep-sea organisms
8
modulation protein-saccharide
4
protein-saccharide interactions
4
deep-sea
4
interactions deep-sea
4
osmolytes
4
high
4
osmolytes high
4
high pressure
4

Similar Publications

Biotransformations of arsenic in marine sediments across marginal slope to hadal zone.

J Hazard Mater

December 2024

Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, China; Shenzhen Key Laboratory of Advanced Technology for Marine Ecology, Shenzhen International Graduate School, Tsinghua University, Shenzhen, China. Electronic address:

Article Synopsis
  • Arsenic compounds are accumulating in the deep ocean, with significant research conducted on sediment cores from the South China Sea and Mariana Trench highlighting their ecological impact.
  • The study found that arsenite methylation is the main process for arsenic transformation in deep-sea sediments, with greater gene presence correlating to increased depth.
  • New insights reveal distinct microbial strategies for arsenic detoxification, including the contribution of arsenite-oxidizing bacteria to the carbon cycle, expanding our understanding of deep-sea ecology.
View Article and Find Full Text PDF

The biophysics of water, has been debated over more than a century. Although its importance is still underestimated, significant breakthroughs occurred in recent years. The influence of protein condensation on water availability control was documented, new findings on water-transport proteins emerged, and the way water molecules rearrange to minimize free energy at interfaces was deciphered, influencing membrane thermodynamics.

View Article and Find Full Text PDF
Article Synopsis
  • TMAO and urea are metabolites used by marine animals to regulate cell volume in salty conditions, with urea acting as a denaturant and TMAO serving as a protective osmolyte against this denaturation.
  • The spatial interactions between TMAO, urea, and proteins are crucial, as TMAO can help stabilize proteins by depleting urea from their surfaces.
  • Research using neutron diffraction showed that TMAO effectively removes urea from a tripeptide's surface, enhancing hydrogen bonding in the solution and supporting the idea that TMAO stabilizes proteins in the presence of urea.
View Article and Find Full Text PDF

Modulation of protein-saccharide interactions by deep-sea osmolytes under high pressure stress.

Int J Biol Macromol

January 2024

Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany. Electronic address:

Deep-sea organisms must cope with high hydrostatic pressures (HHP) up to the kbar regime to control their biomolecular processes. To alleviate the adverse effects of HHP on protein stability most organisms use high amounts of osmolytes. Little is known about the effects of these high concentrations on ligand binding.

View Article and Find Full Text PDF

Deep sea osmolytes in action: their effect on protein-ligand binding under high pressure stress.

Phys Chem Chem Phys

August 2022

Physical Chemistry I - Biophysical Chemistry, Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Street 4a, 44227 Dortmund, Germany.

Because organisms living in the deep sea and in the sub-seafloor must be able to cope with hydrostatic pressures up to 1000 bar and more, their biomolecular processes, including ligand-binding reactions, must be adjusted to keep the associated volume changes low in order to function efficiently. Almost all organisms use organic cosolvents (osmolytes) to protect their cells from adverse environmental conditions. They counteract osmotic imbalance, stabilize the structure of proteins and maintain their function.

View Article and Find Full Text PDF