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Shape changes of epithelia during animal development, such as convergent extension, are achieved through concerted mechanical activity of individual cells. While much is known about the corresponding large scale tissue flow and its genetic drivers, fundamental questions regarding local control of contractile activity on cellular scale and its embryo-scale coordination remain open. To address these questions, we develop a quantitative, model-based analysis framework to relate cell geometry to local tension in recently obtained timelapse imaging data of gastrulating embryos. This analysis provides a systematic decomposition of cell shape changes and T1-rearrangements into internally driven, active, and externally driven, passive, contributions. Our analysis provides evidence that germ band extension is driven by active T1 processes that self-organize through positive feedback acting on tensions. More generally, our findings suggest that epithelial convergent extension results from controlled transformation of internal force balance geometry which combines the effects of bottom-up local self-organization with the top-down, embryo-scale regulation by gene expression.
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http://dx.doi.org/10.1101/2023.05.30.542935 | DOI Listing |
J Neuromuscul Dis
September 2025
Department of Neurology, University of Kansas Medical Center, Kansas City, KS, USA.
Background: Electrical impedance myography (EIM) has been proposed as an efficient, non-invasive biomarker of muscle composition in facioscapulohumeral muscular dystrophy (FSHD).
Objective: We investigate whether EIM parameters are associated with muscle structure measured by magnetic resonance imaging (MRI), muscle histology, and transcriptomic analysis as well as strength at the individual leg muscle level.
Methods: We performed a multi-center cross-sectional study enrolling 33 patients with FSHD.
J Sci Comput
September 2025
MOX-Dipartimento di Matematica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milan, Italy.
We present and analyze a discontinuous Galerkin method for the numerical modeling of a Kelvin-Voigt thermo/poro-viscoelastic problem. We present the derivation of the model and we develop a stability analysis in the continuous setting that holds both for the full inertial and quasi-static problems and that is robust with respect to most of the physical parameters of the problem. For spatial discretization, we propose an arbitrary-order weighted symmetric interior penalty scheme that supports general polytopal grids and is robust with respect to strong heterogeneities in the model coefficients.
View Article and Find Full Text PDFDev Biol
September 2025
Department of Orthopedics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. Electronic address:
Thrombocytopenia-Absent Radius (TAR) syndrome is a rare congenital condition with reduced platelets, forelimb anomalies, and variable heart and kidney defects. TAR syndrome is caused by mutations in RBM8A/Y14, a component of the exon junction complex. How perturbing a general mRNA-processing factor causes the selective TAR Syndrome phenotypes remains unknown.
View Article and Find Full Text PDFFront Neurosci
August 2025
Atlanta VA Health Care System, Decatur, GA, United States.
The startle response is a reflexive contraction of skeletal musculature in response to a strong acoustic stimulus that is evolutionarily preserved across species. There is a broad and comprehensive literature connecting components of the startle response such as latency, magnitude and pre-pulse inhibition, to psychosis status and risk. In this review, we examine the startle response in human subjects with 22q11.
View Article and Find Full Text PDFJ Comput Graph Stat
June 2025
College of Health Sciences, School of Medicine, Moi University.
The multinomial probit (MNP) (Imai and van Dyk, 2005) framework is based on a multivariate Gaussian latent structure, allowing for natural extensions to multilevel modeling. Unlike multinomial logistic models, MNP does not assume independent alternatives. Kindo et al.
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