Identification of a Family of Glycoside Derivatives Biologically Active against and Other MDR Bacteria Using a QSPR Model.

Pharmaceuticals (Basel)

Centro de Investigación en Dinámica Celular (CIDC), Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca 62209, Morelos, Mexico.

Published: February 2023


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

As the rate of discovery of new antibacterial compounds for multidrug-resistant bacteria is declining, there is an urge for the search for molecules that could revert this tendency. has emerged as a highly virulent Gram-negative bacterium that has acquired multiple resistance mechanisms against antibiotics and is considered of critical priority. In this work, we developed a quantitative structure-property relationship (QSPR) model with 592 compounds for the identification of structural parameters related to their property as antibacterial agents against . QSPR mathematical validation (R2 = 70.27, RN = -0.008, a(R2) = 0.014, and δK = 0.021) and its prediction ability (Q2= 67.89, Q2 = 67.75, a(Q2) = -0.068, δQ = 0.0, rm2¯ = 0.229, and Δrm2 = 0.522) were obtained with different statistical parameters; additional validation was done using three sets of external molecules (R2 = 72.89, 71.64 and 71.56). We used the QSPR model to perform a virtual screening on the BIOFACQUIM natural product database. From this screening, our model showed that molecules to and to , isolated from different extracts of plants of the sp., are potential antibacterials against . Furthermore, biological assays showed that molecules and to have a wide antibacterial activity against clinically isolated strains of , as well as other multidrug-resistant bacteria, including , , , and . Finally, we propose as a potential lead compound due to its broad-spectrum activity and its structural simplicity. Therefore, our QSPR model can be used as a tool for the investigation and search for new antibacterial compounds against .

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9964118PMC
http://dx.doi.org/10.3390/ph16020250DOI Listing

Publication Analysis

Top Keywords

qspr model
16
antibacterial compounds
8
multidrug-resistant bacteria
8
qspr
5
model
5
identification family
4
family glycoside
4
glycoside derivatives
4
derivatives biologically
4
biologically active
4

Similar Publications

Physicochemical Property Models for Poly- and Perfluorinated Alkyl Substances and Other Chemical Classes.

J Chem Inf Model

September 2025

United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, 109 TW Alexander Dr., Research Triangle Park, North Carolina 27711, United States.

To assess environmental fate, transport, and exposure for PFAS (per- and polyfluoroalkyl substances), predictive models are needed to fill experimental data gaps for physicochemical properties. In this work, quantitative structure-property relationship (QSPR) models for octanol-water partition coefficient, water solubility, vapor pressure, boiling point, melting point, and Henry's law constant are presented. Over 200,000 experimental property value records were extracted from publicly available data sources.

View Article and Find Full Text PDF

Dengue is a viral disease transmitted to humans through mosquito bites. Researchers have investigated various drugs with potential antiviral properties against it. Some of the promising antiviral drugs include UV-4B (N-9-methoxynonyl-1-deoxynojirimycin), Lycorine, ST-148, 4-HPR, Silymarin, Baicalein, Quercetin, Naringenin, Nelfinavir, Ivermectin, Mosnodenvir (JNJ-1802), NITD-688, Metoclopramide, JNJ-A07 and Betulinic acid.

View Article and Find Full Text PDF

In this paper, we propose a robust deep-learning model based on a Quantitative Structure - Property Relationship (QSPR) approach for estimating the critical temperature (TC), critical pressure (PC), acentric factor (ACEN) and normal boiling point (NBP) of any C, H, O, N, S, P, F, Cl, Br, I molecule. The Mordred calculator was used to determine 247 descriptors to characterize the molecules considered in this work. For each evaluated property, multiple neural networks were trained within a bagging framework.

View Article and Find Full Text PDF

Chemical graph theory and topological indices are key tools in the study of molecular structures and their properties. This research explores anticancer drugs using neighborhood degree-based topological indices and compares their efficacy through regression and machine learning models. The QSPR approach is applied to 15 anticancer drugs by constructing neighborhood-based molecular graphs, and calculating their respective topological indices.

View Article and Find Full Text PDF

This study computes M-polynomial indices for Daunorubicin, an anthracycline antibiotic, is a potent anticancer agent used in treating various malignancies, including acute myeloid leukemia, acute lymphoblastic leukemia and breast cancer. We calculated M-polynomial indices using the edge partition of graphs based on degree and adjacency matrix. A Python code is developed based on an adjacency matrix to efficiently compute the indices that reduce calculation time from days to minutes and eliminate human error.

View Article and Find Full Text PDF