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Chronic obstructive pulmonary disease (COPD) is a highly prevalent lung disease characterized by chronic inflammation and tissue remodeling possibly induced by unusual interactions between fibrocytes and CD8+ T lymphocytes in the peribronchial area. To investigate this phenomenon, we developed a probabilistic cellular automata type model where the two types of cells follow simple local interaction rules taking into account cell death, proliferation, migration and infiltration. We conducted a rigorous mathematical analysis using multiscale experimental data obtained in control and disease conditions to estimate the model's parameters accurately. The simulation of the model is straightforward to implement, and two distinct patterns emerged that we can analyse quantitatively. In particular, we show that the change in fibrocyte density in the COPD condition is mainly the consequence of their infiltration into the lung during exacerbations, suggesting possible explanations for experimental observations in normal and COPD tissue. Our integrated approach that combines a probabilistic cellular automata model and experimental findings will provide further insights into COPD in future studies.
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http://dx.doi.org/10.1016/j.jtbi.2023.111448 | DOI Listing |
Food Microbiol
January 2026
Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, 48824, USA. Electronic address:
Cold stress during forward processing delays of lettuce can induce the formation of viable but nonculturable (VBNC) cells of Shiga toxin-producing Escherichia coli (STEC) O157:H7 and pose risks of foodborne disease outbreaks. This study investigated the effect of physiological changes during the forward processing cold chain on the risks of illness from consuming lettuce contaminated with STEC O157:H7. A probabilistic quantitative microbial risk assessment model was developed to quantify the risks associated with consuming field-bagged Romaine hearts and shredded and packaged lettuce contaminated with STEC O157:H7.
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August 2025
CSIRO, Centre for Australian National Biodiversity Research (a joint venture of Parks Australia and CSIRO), Clunies Ross Street, Canberra ACT 2601, Australia Centre for Australian National Biodiversity Research Canberra Australia.
Morphological data are critical for taxonomy, evolutionary biology, ecology, and species identification. However, no widely used central database for morphological data exists as it does for DNA sequences or specimen data. Most of these data are "locked up" in taxonomic literature.
View Article and Find Full Text PDFEntropy (Basel)
July 2025
Escola de Engenharia, Universidade Presbiteriana Mackenzie, São Paulo 01302-907, SP, Brazil.
In ecosystems, spatial structure plays a fundamental role in shaping the observed dynamics. In particular, the availability and distribution of unoccupied sites-potential habitats-can strongly affect species persistence. However, mathematical models of ecosystems based on ordinary differential equations (ODEs) often neglect the explicit representation of these unoccupied sites.
View Article and Find Full Text PDFBrain Sci
July 2025
Neurodegenerative Disorders Research Pty Ltd., Perth, WA 6005, Australia; Tel.: +61-8-6317-9472.
Background: The mechanisms by which sporadic young-onset neurodegenerative processes develop are uncertain.
Methods: We have previously proposed that stochastic processes involving sequence changes at a DNA, RNA, or protein level in critical genes and proteins might be important to this process. Further investigation points to the contribution of probabilistic states in other factors involved in neurodegenerative conditions, such as-in the case of young onset Alzheimer's disease-head injury, apolipoprotein ε4 alleles and other elements that, by the interaction of conditional probabilities in these variables, influence the evolution of neurodegenerative conditions.
Cytometry A
August 2025
Applied and Computational Mathematics Division, Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland, USA.
Flow cytometry measurements are widely used in diagnostics and medical decision making. Incomplete understanding of sources of measurement uncertainty can make it difficult to distinguish autofluorescence and background sources from signals of interest. Moreover, established methods for modeling uncertainty overlook the fact that the apparent distribution of measurements is a convolution of the inherent population variability (e.
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