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Many strategies are used to quantify microbial (poly)phenol metabolites (MPMs) in urine. Currently, to obtain accurate results, the use of phase II conjugate analytical standards is deemed to be the gold standard. However, these standards are expensive or commercially unavailable. Quantification using an affordable and commercially available unconjugated analytical standard following hydrolysis with the crude preparation from containing arylsulfatase and β-glucuronidase was once considered to be an alternative, but previous studies have shown poor hydrolysis efficiency for conjugated MPMs. In this work, we evaluated the efficiency of purified recombinant enzymes and compared them with the preparation from using 75 urine samples. 38 conjugated MPMs were identified before hydrolysis, associated with 17 unconjugated MPMs. Rapid chemical synthesis of sulfated compounds was carried out to increase the confidence level for the identification of 13 sulfated MPMs. Recombinant enzymes had a mean hydrolysis efficiency of over 95% for 36 out of 38 conjugated MPMs with a hydrolysis time of 30 min. In comparison, the preparation from achieved similar efficiency for only 28 conjugated MPMs after 6 h of hydrolysis. When comparing the concentration of unconjugated MPMs released after enzymatic hydrolysis, recombinant enzymes were more or as effective for almost every MPM. These results demonstrate that accurate quantification of MPMs in urine can be quickly achieved using purified recombinant enzymes and represent an affordable alternative to the use of conjugated analytical standards, improving access to the analysis of the metabolism of (poly)phenols by the gut microbiota.
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http://dx.doi.org/10.1039/d2fo02229j | DOI Listing |
Appl Biochem Biotechnol
September 2025
School of Biological Sciences, University of the Punjab, Quaid-E-Azam Campus, P.O. 54590, Lahore, Pakistan.
Recombinant DNA technology is widely used to produce industrially and pharmaceutically important proteins. In silico analysis, performed before executing wet lab experiments has been greatly helpful in this connection. A shift in protein analysis has been observed over the past decade, driven by advancements in bioinformatics databases, tools, software, and web servers.
View Article and Find Full Text PDFElife
September 2025
Chinese Academy of Medical Science Oxford Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Influenza virus neuraminidase (NA) is a crucial target for protective antibodies, yet the development of recombinant NA protein as a vaccine has been held back by instability and variable expression. We have taken a pragmatic approach to improving expression and stability of NA by grafting antigenic surface loops from low-expressing NA proteins onto the scaffold of high-expressing counterparts. The resulting hybrid proteins retained the antigenic properties of the loop donor while benefiting from the high-yield expression, stability, and tetrameric structure of the loop recipient.
View Article and Find Full Text PDFNucleic Acids Res
September 2025
Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France.
BRCA2 is crucial for mediating homology-directed DNA repair (HDR) through its binding to single-stranded DNA (ssDNA) and the recombinases RAD51 and DMC1. Most BRCA2 orthologs have a canonical DNA-binding domain (DBD) with the exception of Drosophila melanogaster. It remains unclear whether such a noncanonical BRCA2 variant without DBD possesses a DNA-binding activity.
View Article and Find Full Text PDFNucleic Acids Res
September 2025
Department of Genetics, Comenius University Bratislava, Faculty of Natural Sciences, Ilkovičova 6, 842 15 Bratislava, Slovakia.
Poly (ADP-ribose) polymerases (PARPs) are enzymes catalyzing the post-translational addition of chains of ADP-ribose moieties to proteins. In most eukaryotic cells, their primary protein targets are involved in DNA recombination, repair, and chromosome maintenance. Even though this group of enzymes is quite common in both eukaryotes and prokaryotes, no PARP homologs have been described so far in ascomycetous yeasts, leaving their potential roles in this group of organisms unexplored.
View Article and Find Full Text PDFFood Res Int
November 2025
Department of Agriculture and Forest Sciences (DAFNE), Tuscia University, via S. Camillo de Lellis snc, 01100 Viterbo, Italy.
The demand for natural sweeteners as alternatives to sucrose is growing rapidly, driving research into enzymatic bioconversion methods for more efficient production. Glycyrrhizin (GL) is approximately 190 times sweeter than sucrose, but its excessive consumption has been linked to adverse health effects. Its hydrolysis yields glycyrrhetic acid 3-O-mono-β-D-glucuronide (GAMG), a compound nearly 1000 times sweeter than sucrose and with improved sensory and solubility properties.
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