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A large number of strains have been isolated from various environments and many of them have great potential as cell factories. However, they have been rarely developed as cell factories due to their poor transformation efficiency. In this study, we developed a highly efficient plasmid delivery system for undomesticated strains using a modified integrative and conjugative element (MICE), which was designed to be activated by an inducer, prevent self-transfer, and deliver desired plasmids to the recipient cells. The MICE system was demonstrated to successfully introduce a -containing plasmid into all 41 undomesticated strains tested and eight other species. The MICE was used to deliver a cytosine base editor (CBE)-based multiplex genome-editing tool for the cell factory engineering of the species. The introduced CBE enabled one-step inactivation of the major extracellular protease genes of the tested strains. The engineered strains were used as hosts for heterologous expression of nattokinase, which resulted in various enzyme expression levels. The results suggested that the MICE and CBE systems can be powerful tools for genetic engineering of undomesticated strains, and greatly contribute to the expansion of the cell factory.
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http://dx.doi.org/10.3389/fmicb.2022.802040 | DOI Listing |
Biochimie
August 2025
Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia; Center of Molecular and Cellular Biology, Moscow, Russia. Electronic address:
The biosurfactant surfactin is a cyclic lipopeptide produced by different representatives of the genus Bacillus. It has a large surface activity and is considered as a prospective biodegradable detergent. In the present study, we investigated the impact of non-coding 6S-1 RNA - a global transcription regulator in bacteria - on surfactin biosynthesis in the undomesticated B.
View Article and Find Full Text PDFMicrob Biotechnol
August 2025
Department of Microbiological Sciences, North Dakota State University, Fargo, North Dakota, USA.
Genetic engineering research has predominantly focused on well-characterised organisms like Escherichia coli and Bacillus subtilis, with methods that often fail to translate to other microorganisms. This limitation presents a significant challenge, particularly given the increasing isolation of large microbial collections through high-throughput culturomics. In response, we developed a scalable, high-throughput pipeline to evaluate the engineerability of diverse microbial community members we named VECTOR (Versatile Engineering and Characterisation of Transferable Origins and Resistance).
View Article and Find Full Text PDFMicrob Cell Fact
June 2025
Infectious Disease Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea.
Background: Wild-type Bacillus strains have significant industrial and medical value, but their effective utilization often requires strain improvement. The CRISPR/Cas9 system has become the primary tool for genome editing, allowing precise introduction of desired mutations at specific chromosomal locations. However, the practical application of CRISPR/Cas9 in most wild-type Bacillus strains remains challenging due to cellular toxicity resulting from Cas9/sgRNA activity.
View Article and Find Full Text PDFFront Plant Sci
April 2025
Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, United States.
Upland cotton () faces the challenge of limited genetic diversity in the elite or improved gene pool. To address this issue, we explored alleles contributed by five 'converted' exotic lines sampling most of the undomesticated botanical races of , in BCF and F populations. Joint analysis of all populations along with population-specific analyses identified 38 unique QTL for six different fiber quality traits.
View Article and Find Full Text PDFBio Protoc
December 2024
Department of Electrical and Computer Engineering, Texas A & M University, College Station, TX, USA.
Droplet microfluidic platforms have been broadly used to facilitate DNA transfer in mammalian and bacterial hosts via methods such as transformation, transfection, and conjugation, as introduced in our previous work. Herein, we recapitulate our method for conjugal DNA transfer between strains in a droplet for increased conjugation efficiency and throughput of an otherwise laborious protocol. By co-incubating the donor and recipient strains in droplets, our method confines cells into close proximity allowing for increased cell-to-cell interactions.
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