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Bacteria proficient at producing cellulose are an attractive synthetic biology host for the emerging field of Engineered Living Materials (ELMs). Species from the genus produce high yields of pure cellulose materials in a short time with minimal resources, and pioneering work has shown that genetic engineering in these strains is possible and can be used to modify the material and its production. To accelerate synthetic biology progress in these bacteria, we introduce here the tool kit (KTK), a standardized modular cloning system based on Golden Gate DNA assembly that allows DNA parts to be combined to build complex multigene constructs expressed in bacteria from plasmids. Working in , we describe basic parts for this system, including promoters, fusion tags, and reporter proteins, before showcasing how the assembly system enables more complex designs. Specifically, we use KTK cloning to reformat the curli amyloid fiber system for functional expression in , and go on to modify it as a system for programming protein secretion from the cellulose producing bacteria. With this toolkit, we aim to accelerate modular synthetic biology in these bacteria, and enable more rapid progress in the emerging ELMs community.
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http://dx.doi.org/10.1021/acssynbio.1c00358 | DOI Listing |
Folia Microbiol (Praha)
September 2025
Soil Science Division, Bangladesh Wheat and Maize Research Institute, Dinajpur, 5200, Bangladesh.
The aim of the study was to reduce the chemical fertilizers with microbial inoculant-rich vermicompost, which enhanced the growth, flowering, and soil health of the tuberose crop. A total of six treatments were applied with reducing doses of synthetic fertilizers under a factorial randomized design and replicated thrice. In this study, vermicompost (VC) made from cow dung and vegetable waste utilizing Eisenia foetida and their mixed biomass were enriched with microbial inoculants and assessed for their impact on microbial and enzymatic populations including urease, acid phosphatase activity and dehydrogenase activity in soil, nutrient availability, and tuberose development and flowering.
View Article and Find Full Text PDFActa Crystallogr F Struct Biol Commun
October 2025
Science and Technology Facilities Council, Research Complex at Harwell, Didcot OX11 0FA, United Kingdom.
Ease of access to data, tools and models expedites scientific research. In structural biology there are now numerous open repositories of experimental and simulated data sets. Being able to easily access and utilize these is crucial to allow researchers to make optimal use of their research effort.
View Article and Find Full Text PDFACS Synth Biol
September 2025
Department of BioSciences, Rice University, MS-140, 6100 Main Street, Houston, Texas 77005, United States.
Microbes can be programmed to record participation in gene transfer by coding biological-recording devices into mobile DNA. Upon DNA uptake, these devices transcribe a catalytic RNA (cat-RNA) that binds to conserved sequences within ribosomal RNAs (rRNAs) and perform a trans-splicing reaction that adds a barcode to the rRNAs. Existing cat-RNA designs were generated to be broad-host range, providing no control over the organisms that were barcoded.
View Article and Find Full Text PDFNat Prod Rep
September 2025
Saarland University, Department of Pharmacy, Saarbrücken, Germany.
Focus on 2004 to 2024The rediscovery of natural products (NPs) as a critical source of new therapeutics has been greatly advanced by the development of heterologous expression platforms for biosynthetic gene clusters (BGCs). Among these, species have emerged as the most widely used and versatile chassis for expressing complex BGCs from diverse microbial origins. In this review, we provide a comprehensive analysis of over 450 peer-reviewed studies published between 2004 and 2024 that describe the heterologous expression of BGCs in hosts.
View Article and Find Full Text PDFACS Synth Biol
September 2025
Department of Chemical Engineering, Columbia University, New York, New York 10027, United States.
Synthetic biology often employs heterologous enzymatic reactions to reprogram cell metabolism or otherwise introduce novel functions. However, precise control of a particular metabolic pathway can be difficult to achieve because cofactors are shared with endogenous enzymes from a common pool. Recently, the use of noncanonical cofactors (NCCs) has emerged as a promising approach to bypass this problem by isolating desired reactions without the need for a physical barrier.
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