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Taphrinomycotina is the smallest subphylum of the phylum Ascomycota. It is an assemblage of distantly related early diverging lineages of the phylum, comprising organisms with divergent morphology and ecology; however, phylogenomic analyses support its monophyly. In this study, we report the isolation of a yeast strain, which could not be assigned to any of the currently recognised five classes of Taphrinomycotina. The strain of the novel budding species was recovered from extra virgin olive oil and characterised phenotypically by standard methods. The ultrastructure of the cell wall was investigated by transmission electron microscopy. Comparisons of barcoding DNA sequences indicated that the investigated strain is not closely related to any known organism. Tentative phylogenetic placement was achieved by maximum-likelihood analysis of the D1/D2 domain of the nuclear LSU rRNA gene. The genome of the investigated strain was sequenced, assembled, and annotated. Phylogenomic analyses placed it next to the fission species. To accommodate the novel species, , a novel genus , a novel family Novakomycetaceae, a novel order Novakomycetales, and a novel class Novakomycetes is proposed as well. Functional analysis of genes missing in in comparison to revealed that they are biased towards biosynthesis of complex organic molecules, regulation of mRNA, and the electron transport chain. Correlating the genome content and physiology among species of Taphrinomycotina revealed some discordance between pheno- and genotype. produced ascospores in axenic culture preceded by conjugation between two cells. We confirmed that is a primary homothallic species lacking genes for different mating types.
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http://dx.doi.org/10.3390/microorganisms9020301 | DOI Listing |
MycoKeys
August 2025
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan Chongqing Three Gorges Medical College Wanzhou Chongqing China.
In this study, four new species of the genus are described from Pakistan. Based on morphological and multi-locus phylogenetic analyses, we confirmed the distinction of these taxa. The newly identified species are designated as , , , and .
View Article and Find Full Text PDFIntegr Org Biol
July 2025
Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, UK.
Phylogenetic analyses of phenotypic characters in crown-group birds often recover results that are strongly incongruous with the findings of recent phylogenomic analyses. Furthermore, existing morphological datasets for crown birds are frequently limited by restricted taxon or character sampling, inconsistent character construction, incorrect scoring, or a combination of several of these factors. As part of an effort to address these limitations, in this study we focus on identifying phylogenetically informative characters of the avian pectoral girdle and forelimb skeleton, elements of which are commonly preserved as avian fossils.
View Article and Find Full Text PDFJ Helminthol
September 2025
Department of Zoology, Faculty of Science, https://ror.org/00jxshx33South Valley University, Qena, Qena Governorate, 83523, Egypt.
The taxonomic status of Oshmarin, Mamaev & Parukhin, 1961 () and Manter, 1963 is controversial due to overlap/confusion in distinctive diagnostic characteristics for each genus and morphological/allometric ambiguity among some of their representatives and/or within records of the same species. To address these in-depth, morphological descriptions, molecular characterizations, and species delimitation analyses were conducted using a combination of comparative morphology, molecular phylogeny, multivariate analyses, and host-parasite data. Following a comprehensive review, a refined restricted concept of and is proposed.
View Article and Find Full Text PDFJ Exp Bot
September 2025
Genetics and Physiology of microalgae, InBioS/Phytosystems, University of Liège, Belgium.
Photosynthetic organisms have evolved diverse strategies to adapt to fluctuating light conditions, balancing efficient light capture with photoprotection. In green algae and land plants, this involves specialized light-harvesting complexes (LHCs), non-photochemical quenching, and state transitions driven by dynamic remodeling of antenna proteins associated with Photosystems (PS) I and II. Euglena gracilis, a flagellate with a secondary green plastid, represents a distantly related lineage whose light-harvesting regulation remains poorly understood.
View Article and Find Full Text PDFGenetics
September 2025
Institute of Ecology and Evolution, School of Biological Sciences, The University of Edinburgh, Edinburgh, EH9 3FL, United Kingdom.
Recent advances in methods to infer and analyse ancestral recombination graphs (ARGs) are providing powerful new insights in evolutionary biology and beyond. Existing inference approaches tend to be designed for use with fully-phased datasets, and some rely on model assumptions about demography and recombination rate. Here I describe a simple model-free approach for genealogical inference along the genome from unphased genotype data called Sequential Tree Inference by Collecting Compatible Sites (sticcs).
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