98%
921
2 minutes
20
Transposable elements (TEs) are mobile genetic elements that can profoundly impact the evolution of genomes and species. A long-standing hypothesis suggests that hybridization could deregulate TEs and trigger their accumulation, although it received mixed support from studies mostly in plants and animals. Here, we tested this hypothesis in fungi using incipient species of the undomesticated yeast . Population genomic data revealed no signature of higher transposition in natural hybrids. As we could not rule out the elimination of past transposition increase signatures by natural selection, we performed a laboratory evolution experiment on a panel of artificial hybrids to measure TE accumulation in the near absence of selection. Changes in TE copy numbers were not predicted by the level of evolutionary divergence between the parents of a hybrid genotype. Rather, they were highly dependent on the individual hybrid genotypes, showing that strong genotype-specific deterministic factors govern TE accumulation in yeast hybrids.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7584455 | PMC |
http://dx.doi.org/10.7554/eLife.60474 | DOI Listing |
Sci Rep
August 2025
School of Systems and Technology, University of Management and Technology, Lahore, Pakistan.
This study aims to enhance the accuracy of predicting transposon-derived piRNAs through the development of a novel computational method namely TranspoPred. TranspoPred leverages positional, frequency, and moments-based features extracted from RNA sequences. By integrating multiple deep learning networks, the objective is to create a robust tool for forecasting transposon-derived piRNAs, thereby contributing to a deeper understanding of their biological functions and regulatory mechanisms.
View Article and Find Full Text PDFFront Genet
July 2025
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, Guangdong, China.
Objective: Single-cell transcriptome sequencing is a powerful tool for investigating cellular diversity in normal development and disease. However, prevalent methods predominantly employ 3'-end sequencing of transcripts, limiting the analysis of alternative splicing and other post-transcriptional processes. While full-length single-cell transcriptome sequencing methods, such as Smart-seq, offer more comprehensive information, but are restricted by low-throughput.
View Article and Find Full Text PDFBMC Microbiol
August 2025
College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan, China.
Virulence plasmids are key drivers of hypervirulence in Klebsiella pneumoniae. Here, we report a systematic analysis of chromosomal integration of a p17-15vir-derived fragment carrying virulence (rmpA2 and iutA-iucABCD) and resistance genes in nine bla-positive ST11-KL47 carbapenem-resistant K. pneumoniae (CRKP) isolates.
View Article and Find Full Text PDFRev Sci Instrum
August 2025
Institut für angewandte Photonik e.V., Rudower Chaussee 29/31, 12489 Berlin, Germany.
We design an advanced reflective-diffractive optical element (DOE) for high-resolution, parallelized soft x-ray spectroscopy of, e.g., transition metals, here optimized for the Fe L3-edge around 706.
View Article and Find Full Text PDFCurr Opin Plant Biol
July 2025
Department of Plant Reproductive Biology and Epigenetics, Max Planck Institute of Molecular Plant Physiology, Potsdam, 14476, Germany. Electronic address:
Genomic imprinting, the preferential expression of alleles based on their parent-of-origin, is an epigenetic mechanism that plays a key role in endosperm development and establishment of hybridization barriers. While imprinting is frequently associated with DNA methylation asymmetries and transposable elements (TEs), growing evidence suggests that this connection is not applying to all imprinted genes. This review synthesizes recent findings across different plant species, highlighting how TEs not only initiate imprinting through epigenetic reprogramming but also participate in its turnover, driving rapid evolutionary changes.
View Article and Find Full Text PDF