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Standard approaches for uncertainty quantification in cardiovascular modeling pose challenges due to the large number of uncertain inputs and the significant computational cost of realistic three-dimensional simulations. We propose an efficient uncertainty quantification framework utilizing a multilevel multifidelity Monte Carlo (MLMF) estimator to improve the accuracy of hemodynamic quantities of interest while maintaining reasonable computational cost. This is achieved by leveraging three cardiovascular model fidelities, each with varying spatial resolution to rigorously quantify the variability in hemodynamic outputs. We employ two low-fidelity models (zero- and one-dimensional) to construct several different estimators. Our goal is to investigate and compare the efficiency of estimators built from combinations of these two low-fidelity model alternatives and our high-fidelity three-dimensional models. We demonstrate this framework on healthy and diseased models of aortic and coronary anatomy, including uncertainties in material property and boundary condition parameters. Our goal is to demonstrate that for this application it is possible to accelerate the convergence of the estimators by utilizing a MLMF paradigm. Therefore, we compare our approach to single fidelity Monte Carlo estimators and to a multilevel Monte Carlo approach based only on three-dimensional simulations, but leveraging multiple spatial resolutions. We demonstrate significant, on the order of 10 to 100 times, reduction in total computational cost with the MLMF estimators. We also examine the differing properties of the MLMF estimators in healthy versus diseased models, as well as global versus local quantities of interest. As expected, global quantities such as outlet pressure and flow show larger reductions than local quantities, such as those relating to wall shear stress, as the latter rely more heavily on the highest fidelity model evaluations. Similarly, healthy models show larger reductions than diseased models. In all cases, our workflow coupling Dakota's MLMF estimators with the SimVascular cardiovascular modeling framework makes uncertainty quantification feasible for constrained computational budgets.
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http://dx.doi.org/10.1016/j.cma.2020.113030 | DOI Listing |
PLoS One
September 2025
Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle (Saale), Germany.
Pollination is essential for maintaining biodiversity and ensuring food security, and in Europe it is primarily mediated by four insect orders (Coleoptera, Diptera, Hymenoptera, Lepidoptera). However, traditional monitoring methods are costly and time consuming. Although recent automation efforts have focused on butterflies and bees, flies, a diverse and ecologically important group of pollinators, have received comparatively little attention, likely due to the challenges posed by their subtle morphological differences.
View Article and Find Full Text PDFNat Genet
September 2025
Department of Statistics, University of California, Berkeley, CA, USA.
The Ancestral Recombination Graph (ARG), which describes the genealogical history of a sample of genomes, is a vital tool in population genomics and biomedical research. Recent advancements have substantially increased ARG reconstruction scalability, but they rely on approximations that can reduce accuracy, especially under model misspecification. Moreover, they reconstruct only a single ARG topology and cannot quantify the considerable uncertainty associated with ARG inferences.
View Article and Find Full Text PDFPLoS Comput Biol
September 2025
Program of Computational Sciences, Bard College, Annandale-on-Hudson, New York, United States of America.
Agent-based models (ABMs) have become essential tools for simulating complex biological, ecological, and social systems where emergent behaviors arise from the interactions among individual agents. Quantifying uncertainty through global sensitivity analysis is crucial for assessing the robustness and reliability of ABM predictions. However, most global sensitivity methods demand substantial computational resources, making them impractical for highly complex models.
View Article and Find Full Text PDFJ Vis Exp
August 2025
School of Marine and Atmospheric Science, Stony Brook University.
The protocol presented here enables the quantification of microplastics (MPs) as small as ~1 µm in diameter, accurate identification of polymer types, and estimation of particle volume, critically allowing for the calculation of MP mass. Representative results from samples collected in the Great South Bay (GSB), NY, showed that particles within the 1-6 µm equivalent spherical diameter (ESD) range were the most abundant, with approximately 75% of particles measuring less than 5 µm. Notably, the pre-sieving step failed to yield any particles larger than 60 µm, suggesting that large MPs were rare at the coastal sites sampled.
View Article and Find Full Text PDFFront Immunol
September 2025
Institute of Cognitive Neuroscience and Psychology, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Adeno-associated virus (AAV) gene therapy is often limited by pre-existing neutralizing antibodies (NAbs), yet current assays for NAb detection lack standardization and rarely quantify uncertainty, complicating cross-study comparisons. We present coreTIA (core Transduction Inhibition Assay), a comprehensive framework providing a modular experimental protocol and a statistically robust analysis pipeline. This integrated method delivers precise, reproducible NAb titers with quantified uncertainty for every result.
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