A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@gmail.com&api_key=61f08fa0b96a73de8c900d749fcb997acc09&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 197

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 197
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 271
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 1075
Function: getPubMedXML

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3195
Function: GetPubMedArticleOutput_2016

File: /var/www/html/application/controllers/Detail.php
Line: 597
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 511
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 317
Function: require_once

Fragment-Based Electronic Structure for Potential Energy Surfaces Using a Superposition of Fragmentation Topologies. | LitMetric

Fragment-Based Electronic Structure for Potential Energy Surfaces Using a Superposition of Fragmentation Topologies.

J Chem Theory Comput

Department of Chemistry and Department of Physics , Indiana University, 800 East Kirkwood Avenue , Bloomington , Indiana - 47405 , United States.

Published: November 2019


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

We present a new approach for adaptive molecular fragmentation. Here multiple fragmentation protocols, or fragmentation topologies, are combined to efficiently and accurately construct potential energy surfaces that are in agreement with post-Hartree-Fock levels of electronic structure theories at density functional theory (DFT) cost. We benchmark the method through evaluation of quantum nuclear effects in a set of protonated water clusters that are known to display significant quantum effects. In such systems, the straightforward use of molecular fragmentation is hindered by the fact that the most appropriate fragmentation strategy changes as a function of nuclear degrees of freedom. Our approach uses a multilayered hypergraph formalism to decompose the potential energy surface, where, at the very top layer, a tessellation of the potential surface yields a set of independent, but correlated, graphical nodes or vertices; each node represents a different protocol to fragment the molecular system. Correlation between the nodes appears as edges and faces in the graph at the top layer and allows the overall potential surface to be represented as a superposition of multiple fragmentation topologies with the coefficients for the superposition arising from a Hamiltonian formalism that is reminiscent of nonadiabatic dynamics. This allows for a natural interpretation of the individual molecular fragmentation topologies as diabatic or valence-bond-type states which we exploit in our formalism. As stated, the method is demonstrated for protonated water clusters where we are able to obtain potentials surfaces in agreement with post-Hartree-Fock methods at DFT cost.

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jctc.9b00608DOI Listing

Publication Analysis

Top Keywords

fragmentation topologies
16
potential energy
12
molecular fragmentation
12
electronic structure
8
energy surfaces
8
fragmentation
8
multiple fragmentation
8
surfaces agreement
8
agreement post-hartree-fock
8
dft cost
8

Similar Publications