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The use of damping functions in empirical dispersion correction schemes is common and widespread. These damping functions contain scaling and damping parameters, and they are usually optimized for the best performance in practical systems. In this study, it is shown that the overfitting problem can be present in current damping functions, which can sometimes yield erroneous results for real applications beyond the nature of training sets. To this end, we present a damping function called linear soft damping (lsd) that suffers less from this overfitting. This linear damping function damps the asymptotic curve more softly than existing damping functions, attempting to minimize the usual overcorrection. The performance of the proposed damping function was tested with benchmark sets for thermochemistry, reaction energies, and intramolecular interactions, as well as intermolecular interactions including nonequilibrium geometries. For noncovalent interactions, all three damping schemes considered in this study (lsd, lg, and BJ) roughly perform comparably (approximately within 1 kcal/mol), but for atomization energies, lsd clearly exhibits a better performance (up to 2-6 kcal/mol) compared to other schemes due to an overfitting in lg and BJ. The number of unphysical parameters resulting from global optimization also supports the overfitting symptoms shown in the latter numerical tests.
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http://dx.doi.org/10.1063/1.4965818 | DOI Listing |
eNeuro
September 2025
Institute for Behavioral Medicine Research, The Ohio State University, Columbus, OH, 43210.
Cancer patients experience circadian rhythm disruptions during and after chemotherapy that can contribute to debilitating side effects. It is unknown how chemotherapy mediates circadian disruptions, and specifically the extent to which these disruptions occur at the level of the principal clock, the suprachiasmatic nuclei (SCN) of the hypothalamus. In the present study, we assessed how the commonly used chemotherapeutic, paclitaxel, impacts the SCN molecular clock and SCN-dependent behavioral adaptations to circadian challenges in female mice.
View Article and Find Full Text PDFPLoS Comput Biol
September 2025
Department of Mathematical and Computational Methods, National Laboratory for Scientific Computing, Petrópolis, Brazil.
Understanding cerebral circulation is crucial for early diagnosis and patient-oriented therapies for brain conditions. However, blood flow simulations at the organ scale have been limited. This work introduces a framework for modeling extensive vascular networks in the human cerebral cortex and conducting pulsatile blood flow simulations.
View Article and Find Full Text PDFJ Chem Phys
September 2025
School of Materials, Sun Yat-Sen University, Shenzhen, Guangdong 518107, China.
We introduce an extended formulation of the non-Markovian stochastic Schrödinger equation with complex frequency modes (extended cNMSSE), designed for simulating open quantum system dynamics under arbitrary spectral densities. This extension employs non-exponential basis sets to expand the bath correlation functions, overcoming the reliance of the original cNMSSE on exponential decompositions of the spectral density. Consequently, the extended cNMSSE is applicable to environments beyond those characterized by Debye-type spectral densities.
View Article and Find Full Text PDFFront Immunol
September 2025
Laboratory of Experimental Therapeutic (LIM 20), Division of Medicine - School of Medicine of Hospital das Clinicas HCFMUSP, Sao Paulo, Sao Paulo, SP, Brazil.
Smoking remains the main risk factor for the development of chronic obstructive pulmonary disease (COPD). The inflammatory response mediated by innate and adaptive immune cells has been described in the development and progression of the disease, and the importance of Th17 cytokines has been observed. Studies have shown that blocking interleukin (IL)-17 can reduce inflammation in experimental models of lung injury.
View Article and Find Full Text PDFPhys Rev Res
May 2025
Center for Neuroscience, and Department of Neurobiology, Physiology, and Behavior, University of California, Davis, Davis, California 95616, USA.
The nervous system reorganizes memories from an early site to a late site, a commonly observed feature of learning and memory systems known as systems consolidation. Previous work has suggested learning rules by which consolidation may occur. Here, we provide conditions under which such rules are guaranteed to lead to stable convergence of learning and consolidation.
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