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NMR measurements of chemical exchange in a push-pull ethylene, dissolved in a number of different solvents, are presented. These are complemented by high-level electronic structure calculations, using both gas-phase conditions and those which simulate solvents. The results show that it is essential to include entropy effects in order to understand the observed trends. For instance, the equilibrium state in this case represents the state with lowest Gibbs free energy, as it must, but not the lowest enthalpy. The particular molecule is methyl 3-dimethylamino-2-cyanocrotonate (MDACC). The geometry at the carbon-carbon double bond can be either E or Z with roughly equal populations at ambient temperature. We have measured the equilibrium constant and the rates for the exchange between these states in a number of solvents: methanol, chloroform, acetonitrile, toluene, dichloromethane, acetone, and tetrahydrofuran. Furthermore, the N,N-dimethylamino group attached to the double bond also shows restricted rotation, and this has been measured in both the E and Z conformations. The equilibrium constant and the three rotational barriers provide excellent probes of the solvent effects. Electronic structure calculations with a number of basis sets up to the 6-311++G(2df,2p) level, using both Hartree-Fock and density functional (B3LYP) methods were used to predict the E and Z ground states, and the three transition states. The calculations were done for an isolated molecule and also for solvent models representing toluene, acetone, and ethanol. The E conformation is more stable in solution, is the structure in the crystal, and is also the prediction for the gas phase from the calculations. However, the dependence of the equilibrium constant on temperature shows that the Z conformation actually has lower enthalpy. The stability of the E conformation in solution must be due to entropic effects. Similarly, the solvent effect on the E-Z barrier is primarily due to entropy. The measured enthalpy of activation is similar in all the solvents, but the entropy of activation increases with the solvent polarity. The barrier to rotation of the N,N-dimethylamino group shows a combination of entropy and enthalpy effects. This combination of experiments and theory gives an extraordinarily detailed picture of solvent-solute interactions.
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http://dx.doi.org/10.1021/jp201885q | DOI Listing |
Urol Oncol
September 2025
Nutritional, Genes and Human Disease Laboratory, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh. Electronic address:
Background: Understanding the mutational landscape is critical for elucidating the molecular mechanisms driving cancer progression. This study aimed to profile somatic mutations in bladder cancer patients (N=7) from Bangladesh to provide insights into the genetic alterations underlying this malignancy.
Methods: We performed targeted sequencing of 50 oncogenes and tumor suppressor genes using the Ion AmpliSeq Cancer Hotspot Panel v2 on tumor and matched blood samples from seven bladder cancer patients.
J Safety Res
September 2025
Department of Human Resource Management & Employment Relations, King's Business School, King's College London, London WC2B 4BG, United Kingdom; Department of Medical Research, China Medical University Hospital, China Medical University, Taiwan 404 Taichung Taiwan.
Introduction: This study aims to develop and validate a job crafting scale designed specifically for occupational health and safety (OHS) professionals working in a crisis environment. Job crafting, defined as the proactive adjustment of job roles to better align with individual preferences and strengths, is recognized as a valuable strategy for enhancing job satisfaction, engagement, and performance in various occupational settings. However, existing job crafting scales primarily focus on general work contexts and cannot fully capture the unique dimensions of job crafting relevant to OHS professionals in a crisis response context.
View Article and Find Full Text PDFBioorg Med Chem Lett
September 2025
Galapagos SASU, 102 avenue Gaston Roussel, 93230 Romainville, France. Electronic address:
The salt-inducible kinase (SIK) family encompasses three isoforms, SIK1, SIK2, and SIK3, which are members of the AMP-activated protein kinase (AMPK) family of serine/threonine protein kinases. SIK inhibition has emerged as a potential therapeutic approach across multiple indications, as SIKs regulate a diverse set of physiological processes such as metabolism, bone remodeling, immune response, malignancies, skin pigmentation, and circadian rhythm. Within isoform-specific SIK inhibitors there is a need to understand the distinct role of each protein, and here we describe the first SIK1 selective inhibitors.
View Article and Find Full Text PDFExp Cell Res
September 2025
Section of Pharmacology, Department of Internal Medicine, University of Genova, 16132, Genova, Italy; IRCCS Ospedale Policlinico San Martino, 16132, Genova, Italy. Electronic address:
Organoids are 3D structures in which stem, progenitor and differentiated cells spontaneously assemble into structures resembling the original tissue. Endometrial organoids, developed from tissue fragments, are genetically stable and responsive to hormone stimulation acquiring a hallow lumen, secretory activity and apico-basal polarity. However, they show some limitations in mimicking the midluteal endometrium since they lack endothelial, immune, and stromal cells, thus providing limited information about epithelial-stromal interactions.
View Article and Find Full Text PDFBiochim Biophys Acta Biomembr
September 2025
Department of Pharmaceutical Sciences, University of Vienna, Josef-Holaubek-Platz 2, Vienna, Austria.. Electronic address:
Using the stable synthetic analogue 3-aza-dehydroxylysyl-phosphatidylglycerol (3adLPG), the putative role of native staphylococcal LPG in inhibiting the antibiotic daptomycin from binding to its target phosphatidylglycerol (PG), was investigated with respect to interfacial interactions between these lipids, daptomycin, and calcium ions. The influence of lipid monolayer/bilayer composition and interfacial ion concentrations upon the structure and integrity of model membranes were probed after daptomycin challenge using a combination of surface x-ray scattering techniques and fluorescence assays. In models representing the membrane composition of the daptomycin susceptible phenotype consisting of PG/3adLPG in a 7:3 M ratio, calcium ions drive the formation of two separate phases; Ca cross-linked PG/PG pairs and PG/3adLPG ion pairs.
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