Simulation and correction of electron images of tilted planar weak-phase samples.

J Struct Biol

Swiss Institute of Bioinformatics & Biozentrum, University of Basel, Klingelbergstrasse 50/70, Basel, Switzerland.

Published: May 2011


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

The phase contrast theory describes the transfer of information from a weak-phase object to the image plane of a transmission electron microscope. For a tilted sample where the distance from the focal plane varies continuously across the field of view, the recently introduced Tilted Contrast Imaging Function (TCIF) model provides the mathematical description of this information transfer. Here we expand the TCIF model to account for astigmatism, and present several methods to generate simulated images of tilted samples and compare them to experimental results. We analyze in depth the differences between TCIF and the classical Contrast Transfer Function (CTF) model, which assumes invariant defocus, and discuss how they can affect the interpretation of experimental data. In addition, we apply the TCIF model to simulated test objects in order to explore the performance of techniques that aim to correct the artifacts introduced by the imaging function, and evaluate how well they recover the original information after optimizing the parameters.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jsb.2011.02.008DOI Listing

Publication Analysis

Top Keywords

tcif model
12
images tilted
8
imaging function
8
simulation correction
4
correction electron
4
electron images
4
tilted
4
tilted planar
4
planar weak-phase
4
weak-phase samples
4

Similar Publications

Simulation and correction of electron images of tilted planar weak-phase samples.

J Struct Biol

May 2011

Swiss Institute of Bioinformatics & Biozentrum, University of Basel, Klingelbergstrasse 50/70, Basel, Switzerland.

The phase contrast theory describes the transfer of information from a weak-phase object to the image plane of a transmission electron microscope. For a tilted sample where the distance from the focal plane varies continuously across the field of view, the recently introduced Tilted Contrast Imaging Function (TCIF) model provides the mathematical description of this information transfer. Here we expand the TCIF model to account for astigmatism, and present several methods to generate simulated images of tilted samples and compare them to experimental results.

View Article and Find Full Text PDF

A reassigned or time-corrected instantaneous frequency spectrogram has been developed in the work of a number of practitioners. Here we present a general description of this imaging technique and explore its manifold applications to acoustic phonetics. The TCIF spectrogram shows the locations of signal components with unrivalled precision, eliminating the blurring and smearing of components that hamper the readability of the conventional spectrogram.

View Article and Find Full Text PDF